当前解析结果
SmilChr03G000789| 统一新 Gene ID | SmilChr03G000789 |
|---|---|
| 名称 | SmilChr03G000789 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8992586 - 8998102 / - |
| NCBI Gene ID | LOC131017403 |
|---|---|
| GeneID | 131017403 |
| locus_tag | - |
| NCBI Name | LOC131017403 |
| 原始查询 | SmilChr03G000789 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.5; qcov=0.976; evalue=2.39e-69; confidence=low |
| Rice | Os08g0193700- identity=26.9; qcov=0.918; evalue=5.89e-54; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017403 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802131.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057802131.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802131.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802131.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802131.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8992883 |
TCA |
T |
2bp_deletion | frameshift_variant | 4 | A5,B14,B56,C59 |
Chr3:8992883 |
TCA |
T |
2bp_deletion | CDS_variant | 4 | A5,B14,B56,C59 |
Chr3:8992887 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A5,B14,B56,C59 |
Chr3:8992887 |
AT |
A |
1bp_deletion | CDS_variant | 4 | A5,B14,B56,C59 |
Chr3:8992888 |
TAA |
* |
2bp_deletion | CDS_variant | 4 | A5,B14,B56,C59 |
Chr3:8992896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B23,C39 |
Chr3:8992905 |
CG |
C |
1bp_deletion | frameshift_variant | 10 | A5,B101,B12,B130,B14,B56,C12,C18,C59,C7 |
Chr3:8992910 |
TTG |
* |
2bp_deletion | CDS_variant | 2 | B3,C56 |
Chr3:8992912 |
G |
GC |
1bp_insertion | frameshift_variant | 11 | A5,B100,B101,B12,B130,B14,B56,C12,C18,C59,C7 |
Chr3:8992922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C30 |
Chr3:8992923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,C2,C27,C7 |
Chr3:8992947 |
TAA |
T |
2bp_deletion | frameshift_variant | 6 | A22,B122,B3,C73,C77,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802131.1PF00931
NB-ARC 142-297 aa
PF23598
LRR_14 507-778 aa
PF13855
LRR_8 536-588 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802131.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 297 | 8.2e-27 | 94.6 | NB-ARC domain |
XP_057802131.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 507 | 778 | 1.9e-32 | 113.1 | Leucine-rich repeat region |
XP_057802131.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 536 | 588 | 1.7e-07 | 31.6 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。