当前解析结果
SmilChr03G000792| 统一新 Gene ID | SmilChr03G000792 |
|---|---|
| 名称 | SmilChr03G000792 |
| 描述 | probable disease resistance protein RF9 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9008719 - 9009327 / - |
| NCBI Gene ID | LOC131018270 |
|---|---|
| GeneID | 131018270 |
| locus_tag | - |
| NCBI Name | LOC131018270 |
| 原始查询 | SmilChr03G000792 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein RF9 |
| 产物 | probable disease resistance protein RF9 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=38; qcov=0.678; evalue=1.28e-15; confidence=low |
| Rice | Os06g0286700 (Piz)- identity=32.3; qcov=0.95; evalue=2.18e-12; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018270 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802976.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802976.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057802976.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802976.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802976.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9008773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:9008861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:9008891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B47,B5,C28 |
Chr3:9008925 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C28 |
Chr3:9008925 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C28 |
Chr3:9008944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:9008948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr3:9008950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:9008955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:9009065 |
T |
TAA |
2bp_insertion | frameshift_variant | 3 | B77,C66,C74 |
Chr3:9009065 |
T |
TAA |
2bp_insertion | CDS_variant | 3 | B77,C66,C74 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。