Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000793`

染色体: Chr03 坐标: 9016265-9021580 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000793`
名称	SmilChr03G000793
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9016265 - 9021580 / `+`

ID 对照

NCBI Gene ID	`LOC131017405`
GeneID	`131017405`
locus_tag	`-`
NCBI Name	`LOC131017405`
原始查询	`SmilChr03G000793`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.3; qcov=1.03; evalue=1.35e-77; confidence=low
Rice	`Os07g0186500` - identity=29.9; qcov=0.841; evalue=3.38e-69; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017405

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802137.1`
2	Nucleus	细胞核	0.00000	`XP_057802137.1`
3	Chromosome	染色体	0.00000	`XP_057802137.1`
4	Centromere	着丝粒	0.00000	`XP_057802137.1`
5	Chromatin	染色质	0.00000	`XP_057802137.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9017019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr3:9017025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr3:9017030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr3:9017038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr3:9017062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,B89
`Chr3:9017063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B82
`Chr3:9017072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B49,B98,C6
`Chr3:9017073`	`C`	`CAA`	2bp_insertion	frameshift_variant	4	B105,B49,B98,C6
`Chr3:9017073`	`C`	`CAA`	2bp_insertion	CDS_variant	4	B105,B49,B98,C6
`Chr3:9017075`	`TCC`	`T`	2bp_deletion	frameshift_variant	4	B105,B49,B98,C6
`Chr3:9017075`	`TCC`	`T`	2bp_deletion	CDS_variant	4	B105,B49,B98,C6
`Chr3:9017076`	`C`	`CTA`	2bp_insertion	frameshift_variant	4	B123,B89,C16,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802137.1

851 aa

426

851

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-331 aa PF23559 WHD_DRP 414-477 aa PF23598 LRR_14 509-797 aa

XP_057802138.1

851 aa

426

851

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-331 aa PF23559 WHD_DRP 414-477 aa PF23598 LRR_14 509-797 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802137.1`	Pfam	`PF00931`	NB-ARC	Domain	158	331	1.7e-41	142.4	NB-ARC domain
`XP_057802137.1`	Pfam	`PF23559`	WHD_DRP	Domain	414	477	1.1e-14	54.9	Disease resistance protein Winged helix domain
`XP_057802137.1`	Pfam	`PF23598`	LRR_14	Repeat	509	797	9.7e-19	68.0	Leucine-rich repeat region
`XP_057802138.1`	Pfam	`PF00931`	NB-ARC	Domain	158	331	1.7e-41	142.4	NB-ARC domain
`XP_057802138.1`	Pfam	`PF23559`	WHD_DRP	Domain	414	477	1.1e-14	54.9	Disease resistance protein Winged helix domain
`XP_057802138.1`	Pfam	`PF23598`	LRR_14	Repeat	509	797	9.7e-19	68.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946155.1
GCATATACGAGTCAATGGCTGTAAATACGTCTAACAACTATCTATTACTATTATAAAAGTTCGCATTAGTACACATATCATATATCTATATAATATTTATATTATTTTTTAATGCCTAAAAATATACTCCTAATAATTTATTATATATACTCCATCTGCTCAATTATATATGCTTATTTTCCTTTTAACCCATATTTGATTGACTGTTTTTAGAGATTGAAAAGTGATTCAATTAATTGAATTCATTACTTGTTAATTAT...

XM_057946154.1
TAACCTGCGTTCATTTATTGTATCGTGTTGACTAATTACATGTTATATTTACTCTAAAAGTTGAGGTGATGCTACAAAAACTTGCGTGCAAGTGCAAGTATGCTCCAATACAGTTCATCACTTCCAAATTAAATCGTTCTACATCTTCCATCCTTACTCATCAACACCAAATTGTTACTTTGAGATCTTCAAATCTTCCTTCTCAAAACAGTGAAAATAAGAGATGGCTTACGCAGTTCTGCTTTCACTAACCCAAACAA...

CDS

2 records

下载 CDS FASTA

LOC131017405
ATGGCTTACGCAGTTCTGCTTTCACTAACCCAAACAATCACCCAAATCCTGAGGCACGACGACCACCCCATCTCCGTCAACGGCAAACAACAGATGGAAAAGCTCCGCGAACAAGCCATCCACCTCCAAGGATTCCTCAAAATGTTCCCCAAGGAATCCCTGAGTTTGGAAACAAGAATCAGAGACACCGCGAATCAAGCAGAAGACGTGATGGAGCATTTCATGTACGAGCACACCCGGTCGAGCCTCAAAGCGAAGAG...

Protein

2 records

下载 Protein FASTA

XP_057802137.1
MAYAVLLSLTQTITQILRHDDHPISVNGKQQMEKLREQAIHLQGFLKMFPKESLSLETRIRDTANQAEDVMEHFMYEHTRSSLKAKRLEEVGRAVRRTEDIEYDFRELEYVTNEINSIAEQAAAIEKEAGGRPATQPLAASSAPKPAPVIDTVTIGLEKKVEDIKGLLCKGQPERQVIPITGMGGIGKTTLARVLYNHDEVTRAFPLRAWIAVSQNYKPENIFADLLFSLENKNTKALVQDGDTTEDKLHKILTTMKYLI...

XP_057802138.1
MAYAVLLSLTQTITQILRHDDHPISVNGKQQMEKLREQAIHLQGFLKMFPKESLSLETRIRDTANQAEDVMEHFMYEHTRSSLKAKRLEEVGRAVRRTEDIEYDFRELEYVTNEINSIAEQAAAIEKEAGGRPATQPLAASSAPKPAPVIDTVTIGLEKKVEDIKGLLCKGQPERQVIPITGMGGIGKTTLARVLYNHDEVTRAFPLRAWIAVSQNYKPENIFADLLFSLENKNTKALVQDGDTTEDKLHKILTTMKYLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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