当前解析结果
SmilChr03G000807| 统一新 Gene ID | SmilChr03G000807 |
|---|---|
| 名称 | SmilChr03G000807 |
| 描述 | putative disease resistance protein At1g58400 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9232440 - 9236815 / + |
| NCBI Gene ID | LOC131017414 |
|---|---|
| GeneID | 131017414 |
| locus_tag | - |
| NCBI Name | LOC131017414 |
| 原始查询 | SmilChr03G000807 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g58400 |
| 产物 | putative disease resistance protein At1g58400 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=37.7; qcov=0.41; evalue=1.45e-28; confidence=low |
| Rice | Os07g0186500- identity=27.1; qcov=0.489; evalue=1.94e-21; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017414 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802148.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057802148.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802148.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802148.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802148.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9233752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:9233782 |
CA |
C |
1bp_deletion | frameshift_variant | 55 | A10,A16,A22,A23,A3,B103,B114,B118,B124,B131,B133,B137,B20,B22,B25,B29,B32,B38,B48,B55,B57,B59,B65,B70,B71,B76,B81,B83,B91,B97,C10,C14,C15,C16,C21,C24,C25,C26,C30,C35,C41,C42,C46,C49,C55,C57,C58,C60,C63,C78,C79,C84,D5,D8,D9 |
Chr3:9233795 |
CGT |
C |
2bp_deletion | frameshift_variant | 51 | A16,A22,A3,B103,B114,B118,B124,B131,B133,B137,B20,B22,B25,B29,B32,B38,B48,B55,B57,B59,B64,B65,B70,B71,B76,B81,B83,C10,C14,C15,C21,C24,C25,C26,C30,C35,C41,C42,C49,C55,C57,C58,C60,C63,C78,C79,C8,C84,D5,D8,D9 |
Chr3:9233798 |
A |
ATG |
2bp_insertion | frameshift_variant | 33 | A10,A23,B108,B127,B15,B18,B19,B24,B27,B37,B4,B40,B5,B54,B58,B63,B77,B82,B84,B86,B91,B95,B97,C16,C23,C3,C39,C46,C51,C54,C82,C83,C9 |
Chr3:9233801 |
AT |
A |
1bp_deletion | frameshift_variant | 48 | A16,A22,A3,B103,B124,B131,B133,B137,B20,B22,B29,B32,B38,B48,B55,B57,B59,B64,B65,B70,B71,B76,B81,B83,C10,C14,C15,C21,C24,C25,C26,C30,C35,C41,C42,C49,C55,C57,C58,C60,C63,C78,C79,C8,C84,D5,D8,D9 |
Chr3:9233807 |
A |
ACG |
2bp_insertion | frameshift_variant | 2 | B114,B25 |
Chr3:9233807 |
A |
ACG |
2bp_insertion | CDS_variant | 2 | B114,B25 |
Chr3:9233815 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B75 |
Chr3:9233815 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B75 |
Chr3:9233855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:9233910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr3:9233973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,B51,B72,C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802148.1PF00931
NB-ARC 29-209 aa
PF13401
AAA_22 47-141 aa
PF00931
NB-ARC 383-513 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802148.1 |
Pfam | PF00931 |
NB-ARC | Domain | 29 | 209 | 3.9e-49 | 167.3 | NB-ARC domain |
XP_057802148.1 |
Pfam | PF13401 |
AAA_22 | Domain | 47 | 141 | 2.5e-12 | 47.9 | AAA domain |
XP_057802148.1 |
Pfam | PF00931 |
NB-ARC | Domain | 383 | 513 | 3.9e-49 | 167.3 | NB-ARC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。