Resolved gene
SmilChr03G000828| Standard Gene ID | SmilChr03G000828 |
|---|---|
| Name | SmilChr03G000828 |
| Description | probable disease resistance RPP8-like protein 2 |
| Chromosome / SeqID | Chr03 / NC_080389.1 |
| Coordinates and Strand | 9481327 - 9506537 / - |
| NCBI Gene ID | LOC131017430 |
|---|---|
| GeneID | 131017430 |
| locus_tag | - |
| NCBI Name | LOC131017430 |
| Original query | SmilChr03G000828 |
| Source | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| Description | probable disease resistance RPP8-like protein 2 |
| Product | probable disease resistance RPP8-like protein 2 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.7; qcov=0.913; evalue=1.57e-56; confidence=low |
| Rice | Os08g0193700- identity=26.7; qcov=0.931; evalue=2.35e-54; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017430 |
| Rank | Location | Chinese | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802160.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057802160.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802160.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802160.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802160.1 |
The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.
| Position | REF | ALT | Type | Effect | Carriers | Samples |
|---|---|---|---|---|---|---|
Chr3:9481613 |
T |
TA |
1bp_insertion | frameshift_variant | 122 | A1,A10,A11,A18,A19,A22,A23,A24,A4,A8,A9,B1,B100,B101,B102,B104,B106,B109,B11,B111,B112,B117,B12,B120,B121,B123,B129,B13,B133,B135,B136,B14,B140,B16,B17,B2,B20,B21,B24,B25,B27,B28,B29,B3,B30,B31,B35,B4,B40,B41,B42,B46,B47,B48,B49,B56,B57,B58,B60,B62,B64,B66,B67,B68,B69,B71,B72,B74,B76,B77,B79,B81,B82,B84,B86,B87,B9,B91,B93,B95,B97,C10,C11,C15,C16,C17,C18,C19,C22,C26,C27,C28,C3,C30,C31,C33,C34,C35,C39,C4,C42,C45,C46,C47,C48,C50,C51,C55,C57,C61,C62,C64,C68,C69,C70,C71,C77,C8,C80,C81,D1,D11 |
Chr3:9481614 |
G |
GT |
1bp_insertion | frameshift_variant | 13 | A7,B11,B118,B125,B24,C20,C24,C26,C35,C38,C42,C48,C6 |
Chr3:9481627 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | D1 |
Chr3:9481627 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | D1 |
Chr3:9481653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B24 |
Chr3:9481658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B67,B99,C31,C80 |
Chr3:9481660 |
TC |
T |
1bp_deletion | frameshift_variant | 20 | A10,A23,B1,B119,B136,B140,B15,B30,B58,B64,B66,B84,B91,C18,C28,C4,C64,C66,C8,C85 |
Chr3:9481694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:9481700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,C60 |
Chr3:9481707 |
AG |
A |
1bp_deletion | frameshift_variant | 80 | A1,A10,A2,A20,A21,A3,A6,A7,A9,B10,B100,B102,B104,B107,B112,B117,B118,B119,B12,B120,B121,B126,B132,B18,B19,B20,B26,B28,B31,B33,B34,B43,B49,B53,B57,B6,B60,B65,B71,B72,B73,B76,B81,B83,B85,B87,B9,B90,B92,B93,B94,B97,C1,C11,C18,C19,C2,C23,C26,C28,C3,C35,C37,C39,C43,C46,C51,C53,C56,C6,C60,C64,C69,C74,C87,D1,D10,D4,D5,D8 |
Chr3:9481713 |
T |
TC |
1bp_insertion | stop_gained,frameshift_variant | 12 | A15,A16,A23,B100,B135,B29,B66,C4,C40,C5,D5,D9 |
Chr3:9481715 |
C |
CA |
1bp_insertion | frameshift_variant | 11 | A15,A16,A23,B100,B135,B66,C4,C40,C5,D5,D9 |
Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.
XP_057802160.1PF00931
NB-ARC 147-302 aa
PF23598
LRR_14 512-817 aa
PF13855
LRR_8 540-593 aa
XP_057802161.1PF00931
NB-ARC 147-302 aa
PF23598
LRR_14 512-817 aa
PF13855
LRR_8 540-593 aa
| Protein ID | Source | Domain ID | Domain name | Type | Start aa | End aa | E-value | Score | Description |
|---|---|---|---|---|---|---|---|---|---|
XP_057802160.1 |
Pfam | PF00931 |
NB-ARC | Domain | 147 | 302 | 2.4e-30 | 106.1 | NB-ARC domain |
XP_057802160.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 512 | 817 | 9.1e-35 | 120.8 | Leucine-rich repeat region |
XP_057802160.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 540 | 593 | 6.3e-11 | 42.6 | Leucine rich repeat |
XP_057802161.1 |
Pfam | PF00931 |
NB-ARC | Domain | 147 | 302 | 2.4e-30 | 106.1 | NB-ARC domain |
XP_057802161.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 512 | 817 | 9.1e-35 | 120.8 | Leucine-rich repeat region |
XP_057802161.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 540 | 593 | 6.3e-11 | 42.6 | Leucine rich repeat |
Download genomic DNA (gene region only)
Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.
2 records
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