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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000845

染色体: Chr03 坐标: 9637415-9649468 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000845
名称SmilChr03G000845
描述disease resistance RPP8-like protein 3
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向9637415 - 9649468 / -

ID 对照

NCBI Gene IDLOC131017441
GeneID131017441
locus_tag-
NCBI NameLOC131017441
原始查询SmilChr03G000845

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述disease resistance RPP8-like protein 3
产物disease resistance RPP8-like protein 3
ArabidopsisAT5G35450 (AT5G35450)
Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508]
identity=27.8; qcov=1.07; evalue=4.32e-62; confidence=low
RiceOs01g0547000
-
identity=26.4; qcov=0.965; evalue=2.37e-52; confidence=low
GOGO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG-
PfamPF00931 (NB-ARC); PF13401 (AAA_22); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131017441

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057802172.1
2 Cytoplasm 细胞质 0.40000 XP_057802172.1
3 Cytosol 细胞质基质 0.20000 XP_057802172.1
4 Nucleus 细胞核 0.00000 XP_057802172.1
5 Chromosome 染色体 0.00000 XP_057802172.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:9637560 G A EMS_canonical_SNV CDS_variant 2 B55,C31
Chr3:9637573 G A EMS_canonical_SNV CDS_variant 1 B24
Chr3:9637635 C T EMS_canonical_SNV stop_gained 4 B127,B16,C44,C60
Chr3:9637635 C T EMS_canonical_SNV CDS_variant 4 B127,B16,C44,C60
Chr3:9637662 C T EMS_canonical_SNV CDS_variant 2 B130,C74
Chr3:9637664 G A EMS_canonical_SNV CDS_variant 2 C33,D11
Chr3:9637740 C T EMS_canonical_SNV stop_gained 1 B27
Chr3:9637740 C T EMS_canonical_SNV CDS_variant 1 B27
Chr3:9637752 G A EMS_canonical_SNV CDS_variant 4 B38,B91,C21,C6
Chr3:9637760 G GA 1bp_insertion frameshift_variant 53 A21,A6,B101,B102,B104,B108,B114,B12,B122,B127,B132,B14,B15,B16,B17,B25,B3,B39,B40,B55,B59,B69,B7,B74,B75,B76,B80,B85,B89,B94,C1,C11,C14,C18,C2,C23,C34,C37,C40,C44,C45,C46,C50,C6,C60,C62,C67,C81,C83,D5,D6,D7,D8
Chr3:9637788 C T EMS_canonical_SNV CDS_variant 2 B14,B15
Chr3:9637823 G A EMS_canonical_SNV CDS_variant 1 C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802172.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802173.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802174.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802175.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802176.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802177.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802178.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
XP_057802179.1
832 aa
N
1
416
832
NB-ARC
AAA_22
LRR_14
C
PF00931 NB-ARC 146-300 aa PF13401 AAA_22 147-255 aa PF23598 LRR_14 511-781 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802172.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802172.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802172.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802173.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802173.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802173.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802174.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802174.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802174.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802175.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802175.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802175.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802176.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802176.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802176.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802177.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802177.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802177.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802178.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802178.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802178.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region
XP_057802179.1 Pfam PF00931 NB-ARC Domain 146 300 6.2e-26 91.7 NB-ARC domain
XP_057802179.1 Pfam PF13401 AAA_22 Domain 147 255 1.2e-07 32.9 AAA domain
XP_057802179.1 Pfam PF23598 LRR_14 Repeat 511 781 1.3e-32 113.7 Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057946192.1
GAAATTATTGGACACAACGCAGTGTTTGGAACGTCTCCTCTCCTGAAATCTATTTCCTCAACTCTCCTAAGAAAACAAGCACAGAAAATTCATCTCTCTCTTAAAGAGATAATTGAAAATCACGACAAGGGTCTTCTGAAATCGGCGGCGTCACCTTAAATCGTCGGCGTCTCCTGAAATCGGGGGCATCTCCTGAAATCGCGGCGCGGCGTTCTGCAATCGAAGCCCTAAGAATCTGGCGTCTGATACGATTTCTGTTT...
XM_057946191.1
GAAATTATTGGACACAACGCAGTGTTTGGAACGTCTCCTCTCCTGAAATCTATTTCCTCAACTCTCCTAAGAAAACAAGCACAGAAAATTCATCTCTCTCTTAAAGAGATAATTGAAAATCACGACAAGGGTCTTCTGAAATCGGCGGCGTCACCTTAAATCGTCGGCGTCTCCTGAAATCGGGGGCATCTCCTGAAATCGCGGCGCGGCGTTCTGCAATCGAAGCCCTAAGAATCTGGCGTCTGATACGATTTCTGTTT...

CDS

8 records

下载 CDS FASTA
LOC131017441
ATGTCGGAGGCTCTCCTCTTATCGCTGATACAGAAGTTGGACATTAATTATCAAGAAAACATAGAAATAAATGAGGGCGTGAAAGTGGCAATGGAAAGGGTAATTAAAGAGATGAGAGTGATTGTGGAGATTGTGAGGGATAAGAAATTGGAAGAGGGCAGAAGCCTCAATTTTTTAGTATCCGACCTTGTCGACATGGCTGACGATGCCATCGACCATTTCAAACAACACGGAAGCTATAGTTGGAACTATGAATCCAT...
LOC131017441
ATGTCGGAGGCTCTCCTCTTATCGCTGATACAGAAGTTGGACATTAATTATCAAGAAAACATAGAAATAAATGAGGGCGTGAAAGTGGCAATGGAAAGGGTAATTAAAGAGATGAGAGTGATTGTGGAGATTGTGAGGGATAAGAAATTGGAAGAGGGCAGAAGCCTCAATTTTTTAGTATCCGACCTTGTCGACATGGCTGACGATGCCATCGACCATTTCAAACAACACGGAAGCTATAGTTGGAACTATGAATCCAT...

Protein

8 records

下载 Protein FASTA
XP_057802172.1
MSEALLLSLIQKLDINYQENIEINEGVKVAMERVIKEMRVIVEIVRDKKLEEGRSLNFLVSDLVDMADDAIDHFKQHGSYSWNYESIHSWMGEIKKQMLTLGDDDESNIRSLENVDDEYPLVGLEEDLEMLLRKRIIGGEGFFSWAVVIKGMSGIGKTTLAREIYNHPTVRKHFETRAWVSNSTYFTTLKELLINLIQQLEDPLNLHASSLLENMDNRSLRDMLHQHLQGKRYLIVLDDLPKQMRLKFLETLPKCIRSRL...
XP_057802173.1
MSEALLLSLIQKLDINYQENIEINEGVKVAMERVIKEMRVIVEIVRDKKLEEGRSLNFLVSDLVDMADDAIDHFKQHGSYSWNYESIHSWMGEIKKQMLTLGDDDESNIRSLENVDDEYPLVGLEEDLEMLLRKRIIGGEGFFSWAVVIKGMSGIGKTTLAREIYNHPTVRKHFETRAWVSNSTYFTTLKELLINLIQQLEDPLNLHASSLLENMDNRSLRDMLHQHLQGKRYLIVLDDLPKQMRLKFLETLPKCIRSRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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