当前解析结果
SmilChr03G000847| 统一新 Gene ID | SmilChr03G000847 |
|---|---|
| 名称 | SmilChr03G000847 |
| 描述 | disease resistance RPP8-like protein 3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9654315 - 9661096 / - |
| NCBI Gene ID | LOC131017445 |
|---|---|
| GeneID | 131017445 |
| locus_tag | - |
| NCBI Name | LOC131017445 |
| 原始查询 | SmilChr03G000847 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance RPP8-like protein 3 |
| 产物 | disease resistance RPP8-like protein 3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.1; qcov=1.05; evalue=3.47e-62; confidence=low |
| Rice | Os01g0547000- identity=28; qcov=0.835; evalue=1.31e-59; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017445 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057802189.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802189.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802189.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802189.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802189.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9654472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:9654473 |
A |
AC |
1bp_insertion | frameshift_variant | 37 | A10,A11,A20,A23,B1,B114,B119,B122,B124,B136,B139,B140,B15,B2,B20,B32,B61,B64,B66,B78,B84,B87,B9,B91,C16,C18,C28,C4,C46,C51,C54,C58,C64,C66,C8,C85,D10 |
Chr3:9654480 |
TG |
T |
1bp_deletion | frameshift_variant | 21 | A16,A5,A7,B1,B10,B125,B126,B131,B46,B55,B68,B8,B80,B90,B92,B98,C31,C42,C5,C56,C83 |
Chr3:9654539 |
C |
CT |
1bp_insertion | frameshift_variant | 36 | A10,A11,A20,A23,B114,B119,B122,B124,B136,B139,B140,B15,B2,B20,B32,B61,B64,B66,B78,B84,B87,B9,C16,C18,C28,C4,C46,C51,C54,C58,C60,C62,C64,C66,C85,D10 |
Chr3:9654567 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B123,B35,B72,B97,C20,C21 |
Chr3:9654569 |
AG |
A |
1bp_deletion | frameshift_variant | 122 | A16,A22,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B105,B106,B107,B108,B110,B111,B112,B117,B120,B121,B125,B126,B127,B128,B131,B133,B137,B14,B18,B21,B22,B24,B28,B29,B3,B31,B34,B36,B37,B38,B39,B42,B44,B45,B47,B54,B55,B56,B62,B63,B68,B70,B71,B72,B78,B8,B80,B82,B83,B86,B88,B9,B90,B92,B93,B95,B96,B97,C1,C10,C12,C14,C15,C22,C23,C24,C27,C3,C31,C37,C38,C39,C42,C43,C44,C45,C46,C47,C5,C50,C51,C53,C56,C58,C60,C61,C62,C63,C64,C65,C69,C71,C72,C75,C76,C77,C78,C79,C80,C82,C83,C86,C87,D2,D3,D4,D5,D6,D9 |
Chr3:9654571 |
A |
ACC |
2bp_insertion | frameshift_variant | 119 | A16,A22,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B105,B106,B107,B108,B110,B111,B112,B117,B120,B121,B125,B126,B127,B128,B131,B133,B137,B14,B18,B21,B22,B24,B28,B29,B3,B31,B34,B36,B37,B38,B39,B42,B44,B45,B47,B54,B55,B56,B62,B63,B68,B70,B71,B72,B78,B8,B80,B82,B83,B86,B88,B9,B90,B92,B93,B95,B96,B97,C1,C10,C12,C14,C15,C22,C23,C24,C27,C3,C31,C37,C38,C39,C42,C43,C45,C46,C47,C5,C50,C51,C53,C56,C58,C60,C61,C62,C63,C64,C69,C71,C72,C75,C76,C77,C78,C79,C80,C82,C83,C86,C87,D2,D3,D4,D5,D6,D9 |
Chr3:9654572 |
T |
TA |
1bp_insertion | frameshift_variant | 104 | A16,A22,A25,A4,A5,A6,A7,A9,B1,B10,B100,B105,B106,B107,B110,B111,B112,B117,B120,B121,B125,B127,B128,B131,B133,B137,B14,B18,B21,B22,B24,B29,B3,B31,B34,B36,B37,B42,B44,B45,B47,B54,B55,B56,B63,B68,B70,B71,B72,B78,B8,B80,B82,B83,B86,B88,B9,B90,B92,B93,B97,C1,C10,C12,C14,C15,C22,C23,C24,C27,C3,C31,C37,C38,C39,C42,C43,C45,C46,C47,C5,C51,C56,C58,C61,C62,C63,C64,C69,C72,C75,C76,C77,C78,C80,C82,C83,C86,C87,D2,D4,D5,D6,D9 |
Chr3:9654576 |
TCA |
T |
2bp_deletion | frameshift_variant | 114 | A16,A22,A25,A4,A5,A6,A7,A9,B1,B10,B105,B106,B107,B108,B111,B112,B120,B121,B123,B125,B127,B128,B131,B133,B137,B14,B18,B21,B22,B24,B28,B29,B3,B31,B34,B35,B37,B39,B42,B44,B45,B47,B54,B55,B56,B62,B63,B68,B70,B71,B72,B78,B8,B80,B82,B83,B86,B88,B9,B90,B92,B93,B95,B96,B97,C1,C10,C12,C14,C15,C20,C21,C22,C23,C24,C27,C3,C31,C37,C38,C39,C40,C42,C43,C45,C46,C47,C5,C50,C51,C53,C56,C58,C60,C61,C62,C63,C64,C71,C72,C75,C76,C77,C78,C80,C82,C83,C86,D2,D3,D4,D5,D6,D9 |
Chr3:9654595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr3:9654596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C40 |
Chr3:9654635 |
T |
TTC |
2bp_insertion | frameshift_variant | 40 | A22,A5,A9,B10,B105,B106,B110,B121,B127,B131,B133,B137,B22,B28,B3,B31,B37,B47,B55,B56,B71,B72,B80,B86,B90,B97,C14,C21,C27,C3,C31,C51,C56,C58,C71,C75,C78,C83,D3,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802189.1PF00931
NB-ARC 161-311 aa
PF13401
AAA_22 162-250 aa
PF23598
LRR_14 523-830 aa
PF13855
LRR_8 552-605 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802189.1 |
Pfam | PF00931 |
NB-ARC | Domain | 161 | 311 | 3.2e-29 | 102.4 | NB-ARC domain |
XP_057802189.1 |
Pfam | PF13401 |
AAA_22 | Domain | 162 | 250 | 5.8e-08 | 33.8 | AAA domain |
XP_057802189.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 523 | 830 | 4.7e-33 | 115.1 | Leucine-rich repeat region |
XP_057802189.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 552 | 605 | 3.2e-09 | 37.1 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。