当前解析结果
SmilChr03G000855| 统一新 Gene ID | SmilChr03G000855 |
|---|---|
| 名称 | SmilChr03G000855 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9768373 - 9771090 / - |
| NCBI Gene ID | LOC131018287 |
|---|---|
| GeneID | 131018287 |
| locus_tag | - |
| NCBI Name | LOC131018287 |
| 原始查询 | SmilChr03G000855 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=25.7; qcov=0.972; evalue=6.52e-59; confidence=low |
| Rice | Os07g0186500- identity=29.6; qcov=0.757; evalue=8.7e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018287 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057802996.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057802996.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802996.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802996.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802996.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9768378 |
TAG |
T |
2bp_deletion | frameshift_variant | 37 | A1,A20,A21,A9,B106,B110,B111,B113,B124,B137,B139,B23,B25,B27,B35,B61,B62,B67,B74,C10,C11,C14,C2,C26,C35,C36,C40,C50,C51,C58,C68,C69,C70,C76,C82,C87,D8 |
Chr3:9768389 |
C |
CA |
1bp_insertion | frameshift_variant | 9 | B125,B46,B52,B6,B91,C25,C47,C72,D9 |
Chr3:9768419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B46,B52,B91 |
Chr3:9768421 |
CTG |
C |
2bp_deletion | frameshift_variant | 43 | A1,A20,A21,A9,B105,B106,B11,B110,B113,B114,B118,B124,B137,B139,B23,B25,B27,B35,B48,B61,B65,B67,B74,B9,C10,C11,C14,C2,C26,C35,C36,C40,C43,C48,C50,C52,C58,C70,C74,C76,C82,C87,D8 |
Chr3:9768426 |
C |
CAT |
2bp_insertion | frameshift_variant | 43 | A1,A20,A21,A9,B105,B106,B11,B110,B113,B114,B118,B124,B137,B139,B23,B25,B27,B35,B48,B61,B65,B67,B74,B9,C10,C11,C14,C2,C26,C35,C36,C40,C43,C48,C50,C52,C58,C70,C74,C76,C82,C87,D8 |
Chr3:9768437 |
T |
TCA |
2bp_insertion | frameshift_variant | 11 | B125,B46,B52,B6,B91,C25,C47,C50,C72,C81,D9 |
Chr3:9768441 |
GCC |
G |
2bp_deletion | frameshift_variant | 12 | B125,B46,B52,B6,B91,C25,C47,C50,C72,C81,D3,D9 |
Chr3:9768447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C66 |
Chr3:9768455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B136,B61,C24 |
Chr3:9768462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C7 |
Chr3:9768516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr3:9768525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802996.1PF00931
NB-ARC 177-344 aa
PF23559
WHD_DRP 431-502 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802996.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 344 | 2.8e-42 | 144.9 | NB-ARC domain |
XP_057802996.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 431 | 502 | 6.2e-16 | 58.9 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。