当前解析结果
SmilChr03G000858| 统一新 Gene ID | SmilChr03G000858 |
|---|---|
| 名称 | SmilChr03G000858 |
| 描述 | brefeldin A-inhibited guanine nucleotide-exchange protein 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9798326 - 9813070 / - |
| NCBI Gene ID | LOC131017439 |
|---|---|
| GeneID | 131017439 |
| locus_tag | - |
| NCBI Name | LOC131017439 |
| 原始查询 | SmilChr03G000858 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | brefeldin A-inhibited guanine nucleotide-exchange protein 5-like |
| 产物 | brefeldin A-inhibited guanine nucleotide-exchange protein 5-like |
| Arabidopsis | AT3G43300 (ATMIN7)HOPM interactor 7 [Source:NCBI gene (formerly Entrezgene);Acc:823405] identity=62.2; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0564700- identity=53.8; qcov=0.187; evalue=2.75e-99; confidence=weak |
| GO | GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0005802 (trans-Golgi network); GO:0032012 (regulation of ARF protein signal transduction) |
| KEGG | - |
| Pfam | PF01369 (Sec7); PF09324 (Sec7-like_HDS); PF12783 (Sec7-like_HUS); PF16213 (DCB); PF20252 (BIG2_C); PF23325 (TPR_28) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017439 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057802169.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802168.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057802168.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057802169.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057802169.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9798592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B57 |
Chr3:9798626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B49,B80,C3 |
Chr3:9799355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:9799604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:9799652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B99,C27 |
Chr3:9799683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:9799704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B121,B130,C29 |
Chr3:9799731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B48 |
Chr3:9799848 |
CTG |
C |
2bp_deletion | frameshift_variant | 1 | B118 |
Chr3:9799848 |
CTG |
C |
2bp_deletion | CDS_variant | 1 | B118 |
Chr3:9799905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B24,B40,D11 |
Chr3:9799906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B23,B69,B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802168.1PF16213
DCB 109-244 aa
PF12783
Sec7-like_HUS 342-492 aa
PF01369
Sec7 585-765 aa
PF09324
Sec7-like_HDS 1078-1160 aa
PF23325
TPR_28 1237-1332 aa
PF20252
BIG2_C 1547-1737 aa
XP_057802169.1PF16213
DCB 8-141 aa
PF12783
Sec7-like_HUS 239-389 aa
PF01369
Sec7 482-662 aa
PF09324
Sec7-like_HDS 975-1057 aa
PF23325
TPR_28 1134-1229 aa
PF20252
BIG2_C 1444-1634 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802168.1 |
Pfam | PF16213 |
DCB | Repeat | 109 | 244 | 3.5e-29 | 102.5 | Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain |
XP_057802168.1 |
Pfam | PF12783 |
Sec7-like_HUS | Repeat | 342 | 492 | 5.7e-40 | 137.5 | Mon2/Sec7/BIG1-like, HUS domain |
XP_057802168.1 |
Pfam | PF01369 |
Sec7 | Domain | 585 | 765 | 6.3e-62 | 209.2 | Sec7 domain |
XP_057802168.1 |
Pfam | PF09324 |
Sec7-like_HDS | Domain | 1078 | 1160 | 2e-24 | 86.0 | Mon2/Sec7/BIG1-like, HDS |
XP_057802168.1 |
Pfam | PF23325 |
TPR_28 | Repeat | 1237 | 1332 | 1.1e-09 | 39.1 | GBF1-like, tetratrico peptide repeat region |
XP_057802168.1 |
Pfam | PF20252 |
BIG2_C | Domain | 1547 | 1737 | 2.3e-25 | 90.3 | BIG2 C-terminal domain |
XP_057802169.1 |
Pfam | PF16213 |
DCB | Repeat | 8 | 141 | 1.5e-28 | 100.4 | Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain |
XP_057802169.1 |
Pfam | PF12783 |
Sec7-like_HUS | Repeat | 239 | 389 | 3e-39 | 135.2 | Mon2/Sec7/BIG1-like, HUS domain |
XP_057802169.1 |
Pfam | PF01369 |
Sec7 | Domain | 482 | 662 | 5.8e-62 | 209.3 | Sec7 domain |
XP_057802169.1 |
Pfam | PF09324 |
Sec7-like_HDS | Domain | 975 | 1057 | 1.9e-24 | 86.0 | Mon2/Sec7/BIG1-like, HDS |
XP_057802169.1 |
Pfam | PF23325 |
TPR_28 | Repeat | 1134 | 1229 | 8.5e-10 | 39.5 | GBF1-like, tetratrico peptide repeat region |
XP_057802169.1 |
Pfam | PF20252 |
BIG2_C | Domain | 1444 | 1634 | 2.2e-25 | 90.5 | BIG2 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。