当前解析结果
SmilChr03G000863| 统一新 Gene ID | SmilChr03G000863 |
|---|---|
| 名称 | SmilChr03G000863 |
| 描述 | putative late blight resistance protein homolog R1B-12 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9837475 - 9839163 / + |
| NCBI Gene ID | LOC131018291 |
|---|---|
| GeneID | 131018291 |
| locus_tag | - |
| NCBI Name | LOC131018291 |
| 原始查询 | SmilChr03G000863 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-12 |
| 产物 | putative late blight resistance protein homolog R1B-12 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=33.2; qcov=0.644; evalue=5.91e-32; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=36.9; qcov=0.627; evalue=1.24e-41; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018291 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057803000.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057803000.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057803000.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803000.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9837511 |
T |
TTA |
2bp_insertion | stop_gained,frameshift_variant | 45 | A13,A18,B106,B112,B123,B133,B137,B14,B20,B28,B29,B3,B30,B31,B37,B47,B52,B56,B6,B61,B72,B8,B84,B86,B95,B96,B97,B98,C11,C12,C19,C21,C30,C33,C36,C37,C51,C56,C61,C67,C69,C80,C83,C84,D5 |
Chr3:9837532 |
CAT |
C |
2bp_deletion | frameshift_variant | 5 | A5,B1,B117,C6,D1 |
Chr3:9837532 |
CAT |
C |
2bp_deletion | CDS_variant | 5 | A5,B1,B117,C6,D1 |
Chr3:9837535 |
G |
GCA |
2bp_insertion | frameshift_variant | 5 | A5,B1,B117,C6,D1 |
Chr3:9837535 |
G |
GCA |
2bp_insertion | CDS_variant | 5 | A5,B1,B117,C6,D1 |
Chr3:9837548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B1,B117,C6,D1 |
Chr3:9837592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B119 |
Chr3:9837595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B119 |
Chr3:9837631 |
G |
GA |
1bp_insertion | frameshift_variant | 21 | A21,B106,B120,B31,B40,B41,B42,B43,B53,B62,B71,B79,B99,C28,C47,C57,C61,C70,C72,C87,D11 |
Chr3:9837639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B41,B53,C47,C57 |
Chr3:9837714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,C25,C41 |
Chr3:9837720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803000.1PF00931
NB-ARC 182-241 aa
PF23559
WHD_DRP 331-393 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803000.1 |
Pfam | PF00931 |
NB-ARC | Domain | 182 | 241 | 4.5e-16 | 59.6 | NB-ARC domain |
XP_057803000.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 331 | 393 | 1.5e-14 | 54.4 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。