当前解析结果
SmilChr03G000870| 统一新 Gene ID | SmilChr03G000870 |
|---|---|
| 名称 | SmilChr03G000870 |
| 描述 | protein COBRA-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9880632 - 9885394 / + |
| NCBI Gene ID | LOC131017465 |
|---|---|
| GeneID | 131017465 |
| locus_tag | - |
| NCBI Name | LOC131017465 |
| 原始查询 | SmilChr03G000870 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein COBRA-like |
| 产物 | protein COBRA-like |
| Arabidopsis | AT5G60920 (COB)COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family [Source:NCBI gene (formerly Entrezgene);Acc:836213] identity=79; qcov=0.96; evalue=0; confidence=high |
| Rice | Os05g0386800 (BC1L4)- identity=76.9; qcov=0.962; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0010215 (cellulose microfibril organization); GO:0052324 (plant-type cell wall cellulose biosynthetic process) |
| KEGG | - |
| Pfam | PF04833 (COBRA_N); PF25079 (COB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017465 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802201.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802201.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802201.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802201.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802201.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9881671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B36 |
Chr3:9882788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,C25,C27 |
Chr3:9882794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr3:9882881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B113,B32,B91,C86 |
Chr3:9882901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:9882913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B36,B72 |
Chr3:9884257 |
GCA |
G |
2bp_deletion | frameshift_variant | 15 | A15,A18,A19,B104,B108,B110,B13,B15,B18,B26,C13,C42,C46,C52,C74 |
Chr3:9884258 |
CA |
C |
1bp_deletion | frameshift_variant | 51 | A2,B100,B109,B11,B114,B123,B125,B130,B135,B2,B27,B35,B38,B39,B40,B41,B44,B48,B51,B63,B66,B73,B76,B77,B80,B89,B97,B98,B99,C1,C18,C20,C24,C29,C3,C30,C37,C40,C49,C51,C53,C54,C55,C65,C71,C72,C74,C75,C77,C8,D4 |
Chr3:9884283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C42 |
Chr3:9884311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C8 |
Chr3:9884344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:9884431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802201.1PF04833
COBRA_N 52-215 aa
PF25079
COB_C 224-418 aa
XP_057802202.1PF04833
COBRA_N 52-215 aa
PF25079
COB_C 224-418 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802201.1 |
Pfam | PF04833 |
COBRA_N | Domain | 52 | 215 | 2e-69 | 233.5 | COBRA N-terminal domain |
XP_057802201.1 |
Pfam | PF25079 |
COB_C | Domain | 224 | 418 | 1.2e-62 | 212.4 | COBRA family C-terminal domain |
XP_057802202.1 |
Pfam | PF04833 |
COBRA_N | Domain | 52 | 215 | 2e-69 | 233.5 | COBRA N-terminal domain |
XP_057802202.1 |
Pfam | PF25079 |
COB_C | Domain | 224 | 418 | 1.2e-62 | 212.4 | COBRA family C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。