当前解析结果
SmilChr03G000886| 统一新 Gene ID | SmilChr03G000886 |
|---|---|
| 名称 | SmilChr03G000886 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10111702 - 10113989 / - |
| NCBI Gene ID | LOC131017480 |
|---|---|
| GeneID | 131017480 |
| locus_tag | - |
| NCBI Name | LOC131017480 |
| 原始查询 | SmilChr03G000886 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32.4; qcov=0.997; evalue=3.06e-40; confidence=low |
| Rice | Os11g0633500- identity=31.5; qcov=0.9; evalue=2.18e-27; confidence=low |
| GO | GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802210.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802210.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802210.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802210.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10112016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,A24,B139,B60,C52 |
Chr3:10112018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:10112025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,B98 |
Chr3:10112033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr3:10112049 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | A22,B117,C15 |
Chr3:10112049 |
AG |
A |
1bp_deletion | CDS_variant | 3 | A22,B117,C15 |
Chr3:10112080 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | A22,C35 |
Chr3:10112080 |
TA |
T |
1bp_deletion | CDS_variant | 2 | A22,C35 |
Chr3:10112083 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | A22,C35 |
Chr3:10112083 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | A22,C35 |
Chr3:10112967 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B82,B9,C26 |
Chr3:10112967 |
TC |
T |
1bp_deletion | CDS_variant | 3 | B82,B9,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802210.1PF18052
Rx_N 6-94 aa
PF00931
NB-ARC 168-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802210.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 94 | 2.1e-24 | 86.2 | Rx N-terminal domain |
XP_057802210.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 310 | 8.7e-25 | 88.0 | NB-ARC domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。