Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000889`

染色体: Chr03 坐标: 10157737-10162855 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000889`
名称	SmilChr03G000889
描述	putative disease resistance protein At1g50180
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10157737 - 10162855 / `-`

ID 对照

NCBI Gene ID	`LOC131017483`
GeneID	`131017483`
locus_tag	`-`
NCBI Name	`LOC131017483`
原始查询	`SmilChr03G000889`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g50180
产物	putative disease resistance protein At1g50180
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.9; qcov=0.959; evalue=1.77e-88; confidence=medium
Rice	`Os01g0547000` - identity=30.2; qcov=1.01; evalue=2.84e-72; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802212.1`
2	Nucleus	细胞核	0.00000	`XP_057802212.1`
3	Chromosome	染色体	0.00000	`XP_057802212.1`
4	Centromere	着丝粒	0.00000	`XP_057802212.1`
5	Chromatin	染色质	0.00000	`XP_057802212.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10158102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:10158128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:10158133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:10158180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B18,B78,C17
`Chr3:10158181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B18,B78,C17
`Chr3:10158243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B65,D3
`Chr3:10158253`	`C`	`CA`	1bp_insertion	frameshift_variant	1	A10
`Chr3:10158253`	`C`	`CA`	1bp_insertion	CDS_variant	1	A10
`Chr3:10158284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B17,B36,B56,C7
`Chr3:10158289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B74,B90,B92
`Chr3:10158309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B137,B16,B64,C26
`Chr3:10158380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802212.1

863 aa

432

863

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-94 aa PF00931 NB-ARC 168-345 aa PF23559 WHD_DRP 434-503 aa PF23598 LRR_14 551-844 aa

XP_057802213.1

559 aa

280

559

Rx_N

NB-ARC

WHD_DRP

PF18052 Rx_N 6-94 aa PF00931 NB-ARC 168-345 aa PF23559 WHD_DRP 434-503 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802212.1`	Pfam	`PF18052`	Rx_N	Domain	6	94	7.4e-24	84.4	Rx N-terminal domain
`XP_057802212.1`	Pfam	`PF00931`	NB-ARC	Domain	168	345	3.3e-35	121.9	NB-ARC domain
`XP_057802212.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	503	4.2e-16	59.5	Disease resistance protein Winged helix domain
`XP_057802212.1`	Pfam	`PF23598`	LRR_14	Repeat	551	844	5.2e-25	88.6	Leucine-rich repeat region
`XP_057802213.1`	Pfam	`PF18052`	Rx_N	Domain	6	94	4.3e-24	85.2	Rx N-terminal domain
`XP_057802213.1`	Pfam	`PF00931`	NB-ARC	Domain	168	345	1.4e-35	123.2	NB-ARC domain
`XP_057802213.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	503	2e-16	60.5	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946229.1
GTGTTAGCTTGTTTGCCATATTTAAGCCCTAAAATCGTGAAAAGATTGGCAACGGAAAATTTTAGAGAGCAATTTTGTGATCGATCATTATGGCAGCGGAAGCGGCAATCTCATCTTTGGTCGAACTACTGGGCAATCTGCTCATCCAGAAAGTTAAATTCCTGCGAGGCGTCGAGGGAAAGGTGGAGTTGCTGAGAGAGGAGCTGAAGATGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTGAAGAGGAG...

XM_057946230.1
TTTTACTGTCCTACCTTTAAATTTGTCGGGCATATTTACTTAACAGCCTTACGAAGATTAGAAATGGTAACTTGTTTGGAATGTTTACTTTACGCCCTTATGAAGTTTTGAATAAAAGTGTTAGCTTGTTTGCCATATTTAAGCCCTAAAATCGTGAAAAGATTGGCAACGGAAAATTTTAGAGAGCAATTTTGTGATCGATCATTATGGCAGCGGAAGCGGCAATCTCATCTTTGGTCGAACTACTGGGCAATCTGCTC...

CDS

2 records

下载 CDS FASTA

LOC131017483
ATGGCAGCGGAAGCGGCAATCTCATCTTTGGTCGAACTACTGGGCAATCTGCTCATCCAGAAAGTTAAATTCCTGCGAGGCGTCGAGGGAAAGGTGGAGTTGCTGAGAGAGGAGCTGAAGATGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTGAAGAGGAGAGGGTGCGTAATTGGATCTCGAGTATCAGAGAGTTGGCTCAAGATGCCGAAGATACCATCGAGATCTTCCTTCTCAACATTGAGAGTGC...

Protein

2 records

下载 Protein FASTA

XP_057802212.1
MAAEAAISSLVELLGNLLIQKVKFLRGVEGKVELLREELKMMQSFLKDANKKQFEEERVRNWISSIRELAQDAEDTIEIFLLNIESAKNWGLLKRCTSSPKRMYHLDKIGDEIESIRDRLDAIDKSRERYGIKDLGEAAESASRWEVESRRRLCPWQKDEHLVGVKDDVEKLLHESILCEEKKGLCIAVLEGMGGIGKSTLAREIYNHPDVVAGPFDRRGWVVVSSEFTPQETIKQLIFELLGSDKQKVRELEESTKDKQ...

XP_057802213.1
MAAEAAISSLVELLGNLLIQKVKFLRGVEGKVELLREELKMMQSFLKDANKKQFEEERVRNWISSIRELAQDAEDTIEIFLLNIESAKNWGLLKRCTSSPKRMYHLDKIGDEIESIRDRLDAIDKSRERYGIKDLGEAAESASRWEVESRRRLCPWQKDEHLVGVKDDVEKLLHESILCEEKKGLCIAVLEGMGGIGKSTLAREIYNHPDVVAGPFDRRGWVVVSSEFTPQETIKQLIFELLGSDKQKVRELEESTKDKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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