当前解析结果
SmilChr03G000891| 统一新 Gene ID | SmilChr03G000891 |
|---|---|
| 名称 | SmilChr03G000891 |
| 描述 | glycine-rich RNA-binding protein 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10171108 - 10172298 / - |
| NCBI Gene ID | LOC131017486 |
|---|---|
| GeneID | 131017486 |
| locus_tag | - |
| NCBI Name | LOC131017486 |
| 原始查询 | SmilChr03G000891 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycine-rich RNA-binding protein 2-like |
| 产物 | glycine-rich RNA-binding protein 2-like |
| Arabidopsis | AT4G39260 (CCR1)cold, circadian rhythm, and RNA binding 1 [Source:NCBI gene (formerly Entrezgene);Acc:830082] identity=75.8; qcov=0.287; evalue=2.1e-07; confidence=weak |
| Rice | Os12g0632000 (GRP162)- identity=84; qcov=0.217; evalue=2.89e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017486 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802216.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802216.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057802216.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802216.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802216.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10171442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:10171476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B104,C19,C71 |
Chr3:10171478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C6 |
Chr3:10171486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B60,B61,C58,C74,C87 |
Chr3:10171493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C28 |
Chr3:10171538 |
G |
GC |
1bp_insertion | frameshift_variant | 9 | B21,B86,B97,B98,C31,C38,C56,C74,D11 |
Chr3:10171584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B134,B64,C74 |
Chr3:10171588 |
GC |
* |
1bp_deletion | CDS_variant | 1 | C19 |
Chr3:10171607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B89,C78 |
Chr3:10171644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,C36,C78 |
Chr3:10171649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C36,C78 |
Chr3:10171662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,C36,C78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。