Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000892`

染色体: Chr03 坐标: 10181406-10197972 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000892`
名称	SmilChr03G000892
描述	putative disease resistance protein At1g50180
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10181406 - 10197972 / `-`

ID 对照

NCBI Gene ID	`LOC131017484`
GeneID	`131017484`
locus_tag	`-`
NCBI Name	`LOC131017484`
原始查询	`SmilChr03G000892`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g50180
产物	putative disease resistance protein At1g50180
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=36.2; qcov=0.968; evalue=1.96e-87; confidence=medium
Rice	`Os06g0158300` (KMK0024M20.32) - identity=30.6; qcov=0.964; evalue=2.05e-71; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802214.1`
2	Nucleus	细胞核	0.00000	`XP_057802214.1`
3	Chromosome	染色体	0.00000	`XP_057802214.1`
4	Centromere	着丝粒	0.00000	`XP_057802214.1`
5	Chromatin	染色质	0.00000	`XP_057802214.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10181574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,B94
`Chr3:10181575`	`T`	`TGA`	2bp_insertion	frameshift_variant	22	A23,B1,B119,B122,B136,B140,B15,B2,B30,B32,B58,B61,B64,B66,B84,C16,C18,C51,C54,C64,C8,C85
`Chr3:10181577`	`ACT`	`A`	2bp_deletion	frameshift_variant	22	A23,B1,B119,B122,B136,B140,B15,B2,B30,B32,B58,B61,B64,B66,B84,C16,C18,C51,C54,C64,C8,C85
`Chr3:10181584`	`T`	`TTA`	2bp_insertion	frameshift_variant	2	B95,C24
`Chr3:10181584`	`T`	`TTA`	2bp_insertion	CDS_variant	2	B95,C24
`Chr3:10181613`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B72
`Chr3:10181613`	`AG`	`A`	1bp_deletion	CDS_variant	1	B72
`Chr3:10181646`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B42
`Chr3:10181646`	`A`	`AT`	1bp_insertion	CDS_variant	1	B42
`Chr3:10181648`	`C`	`CGT`	2bp_insertion	frameshift_variant	1	B42
`Chr3:10181648`	`C`	`CGT`	2bp_insertion	CDS_variant	1	B42
`Chr3:10181705`	`G`	`GA`	1bp_insertion	frameshift_variant	142	A10,A13,A18,A2,A20,A23,A24,A4,A6,A7,A9,B10,B105,B106,B107,B108,B109,B110,B114,B117,B119,B120,B122,B124,B127,B128,B130,B134,B136,B137,B138,B139,B14,B140,B15,B16,B17,B20,B23,B25,B26,B30,B32,B33,B37,B38,B4,B40,B41,B42,B43,B44,B45,B47,B5,B50,B53,B58,B59,B6,B60,B61,B62,B64,B65,B66,B67,B68,B70,B71,B73,B74,B75,B77,B78,B8,B80,B82,B83,B85,B87,B89,B91,B92,B96,B97,B98,B99,C12,C14,C15,C16,C17,C18,C20,C23,C24,C25,C29,C3,C32,C33,C35,C37,C4,C40,C42,C44,C46,C47,C48,C5,C50,C51,C52,C54,C57,C6,C62,C64,C66,C68,C69,C7,C70,C73,C75,C76,C77,C78,C79,C8,C82,C83,C85,C9,D1,D10,D2,D3,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802214.1

860 aa

430

860

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-94 aa PF00931 NB-ARC 167-346 aa PF23559 WHD_DRP 434-503 aa PF23598 LRR_14 548-841 aa

XP_057802215.1

556 aa

278

556

Rx_N

NB-ARC

WHD_DRP

PF18052 Rx_N 6-94 aa PF00931 NB-ARC 167-346 aa PF23559 WHD_DRP 434-503 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802214.1`	Pfam	`PF18052`	Rx_N	Domain	6	94	5.3e-23	81.7	Rx N-terminal domain
`XP_057802214.1`	Pfam	`PF00931`	NB-ARC	Domain	167	346	6.6e-36	124.2	NB-ARC domain
`XP_057802214.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	503	2.1e-16	60.4	Disease resistance protein Winged helix domain
`XP_057802214.1`	Pfam	`PF23598`	LRR_14	Repeat	548	841	2.7e-27	96.2	Leucine-rich repeat region
`XP_057802215.1`	Pfam	`PF18052`	Rx_N	Domain	6	94	2.7e-23	82.6	Rx N-terminal domain
`XP_057802215.1`	Pfam	`PF00931`	NB-ARC	Domain	167	346	3.2e-36	125.2	NB-ARC domain
`XP_057802215.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	503	1e-16	61.4	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946231.1
AAACCAAAGCGATTGGTACAATCTCAGATCTATCAATATGGCAGCTGAAGCAGCAATCTCAACTCTGGTCGAACTACTGGGCAATCAGCTCATCGAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGTAAGGTGGAGTTGCTGAGAGAAGAGCTGAAGAGGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTGAAGACGAGAGCGTGCGCAATTGGATCTCGGAGATTAGAGAGTTGGCTCAAGATGCCCAAG...

XM_057946232.1
AAAGCGATTGGTACAATCTCAGATCTATCAATATGGCAGCTGAAGCAGCAATCTCAACTCTGGTCGAACTACTGGGCAATCAGCTCATCGAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGTAAGGTGGAGTTGCTGAGAGAAGAGCTGAAGAGGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTGAAGACGAGAGCGTGCGCAATTGGATCTCGGAGATTAGAGAGTTGGCTCAAGATGCCCAAGATACG...

CDS

2 records

下载 CDS FASTA

LOC131017484
ATGGCAGCTGAAGCAGCAATCTCAACTCTGGTCGAACTACTGGGCAATCAGCTCATCGAGAAGGTTAAATTCCTGCGAGGCGTCGAGGGTAAGGTGGAGTTGCTGAGAGAAGAGCTGAAGAGGATGCAATCCTTTCTCAAAGACGCCAACAAAAAGCAATTTGAAGACGAGAGCGTGCGCAATTGGATCTCGGAGATTAGAGAGTTGGCTCAAGATGCCCAAGATACGATCGAGATCTTCCTTCTCAACGTTGAGAATGC...

Protein

2 records

下载 Protein FASTA

XP_057802214.1
MAAEAAISTLVELLGNQLIEKVKFLRGVEGKVELLREELKRMQSFLKDANKKQFEDESVRNWISEIRELAQDAQDTIEIFLLNVENAKNWGLFKRCTSSPKRMYHLYKIGDEIESIRARLDAIDKSRERYGIKDLGEAAESASRLEVELRRRLCPWQKDEHLVGVEDDVKKLLQQSILCEEKKGLSITVLEGMGGIGKSTLAREIYNHPDVVAGPFERRGWVVVSSEFTPQETIKQLILELPGSDKQKVRELEESTKDKL...

XP_057802215.1
MAAEAAISTLVELLGNQLIEKVKFLRGVEGKVELLREELKRMQSFLKDANKKQFEDESVRNWISEIRELAQDAQDTIEIFLLNVENAKNWGLFKRCTSSPKRMYHLYKIGDEIESIRARLDAIDKSRERYGIKDLGEAAESASRLEVELRRRLCPWQKDEHLVGVEDDVKKLLQQSILCEEKKGLSITVLEGMGGIGKSTLAREIYNHPDVVAGPFERRGWVVVSSEFTPQETIKQLILELPGSDKQKVRELEESTKDKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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