当前解析结果
SmilChr03G000904| 统一新 Gene ID | SmilChr03G000904 |
|---|---|
| 名称 | SmilChr03G000904 |
| 描述 | disease resistance protein RPH8A-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10343730 - 10354110 / + |
| NCBI Gene ID | LOC131017503 |
|---|---|
| GeneID | 131017503 |
| locus_tag | - |
| NCBI Name | LOC131017503 |
| 原始查询 | SmilChr03G000904 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPH8A-like |
| 产物 | disease resistance protein RPH8A-like |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=30.9; qcov=1.02; evalue=2.74e-102; confidence=low |
| Rice | Os01g0547000- identity=28.5; qcov=1.05; evalue=5.24e-86; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF24883 (NPHP3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017503 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802242.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802242.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802242.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802242.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10344021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,B88,C34 |
Chr3:10344054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr3:10344084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B41,B53,C57,C77 |
Chr3:10344120 |
C |
CTA |
2bp_insertion | stop_gained,frameshift_variant | 6 | B120,B41,B53,C47,C57,C77 |
Chr3:10344124 |
AGG |
A |
2bp_deletion | frameshift_variant | 6 | B120,B41,B53,C47,C57,C77 |
Chr3:10344149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C14 |
Chr3:10344210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr3:10344230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr3:10344246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B44,C53,C86 |
Chr3:10344269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B69,B71,B87 |
Chr3:10344303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B44,C53,C86 |
Chr3:10344307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B108,B33,C23,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802242.1PF18052
Rx_N 5-90 aa
PF00931
NB-ARC 170-353 aa
PF24883
NPHP3_N 187-320 aa
PF23559
WHD_DRP 442-511 aa
PF23598
LRR_14 584-863 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802242.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 90 | 9.1e-25 | 87.3 | Rx N-terminal domain |
XP_057802242.1 |
Pfam | PF00931 |
NB-ARC | Domain | 170 | 353 | 1.7e-32 | 113.1 | NB-ARC domain |
XP_057802242.1 |
Pfam | PF24883 |
NPHP3_N | Domain | 187 | 320 | 2e-06 | 28.8 | Nephrocystin 3, N-terminal |
XP_057802242.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 442 | 511 | 1.3e-16 | 61.1 | Disease resistance protein Winged helix domain |
XP_057802242.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 584 | 863 | 2.6e-25 | 89.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。