当前解析结果
SmilChr03G000908| 统一新 Gene ID | SmilChr03G000908 |
|---|---|
| 名称 | SmilChr03G000908 |
| 描述 | disease susceptibility protein LOV1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10405878 - 10409933 / + |
| NCBI Gene ID | LOC131017505 |
|---|---|
| GeneID | 131017505 |
| locus_tag | - |
| NCBI Name | LOC131017505 |
| 原始查询 | SmilChr03G000908 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease susceptibility protein LOV1-like |
| 产物 | disease susceptibility protein LOV1-like |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=30.2; qcov=1.02; evalue=1.01e-100; confidence=low |
| Rice | Os01g0547000- identity=29.6; qcov=1.02; evalue=3.57e-98; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017505 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802244.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802244.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802244.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802244.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802244.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10406046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B135,B36,B99,C48 |
Chr3:10406088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C87,D10 |
Chr3:10406093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B91,D11 |
Chr3:10406097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C71 |
Chr3:10406118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr3:10406131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D10 |
Chr3:10406184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr3:10406190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B78,C78 |
Chr3:10406269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr3:10406277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:10406278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C10 |
Chr3:10406347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B44,B47,C47,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802244.1PF18052
Rx_N 6-94 aa
PF00931
NB-ARC 184-359 aa
PF23559
WHD_DRP 446-516 aa
PF23598
LRR_14 565-863 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802244.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 94 | 1.1e-20 | 74.2 | Rx N-terminal domain |
XP_057802244.1 |
Pfam | PF00931 |
NB-ARC | Domain | 184 | 359 | 7.6e-37 | 127.2 | NB-ARC domain |
XP_057802244.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 446 | 516 | 1.7e-19 | 70.3 | Disease resistance protein Winged helix domain |
XP_057802244.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 565 | 863 | 3.2e-24 | 86.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。