Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000912`

染色体: Chr03 坐标: 10436993-10445143 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000912`
名称	SmilChr03G000912
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10436993 - 10445143 / `+`

ID 对照

NCBI Gene ID	`LOC131017516`
GeneID	`131017516`
locus_tag	`-`
NCBI Name	`LOC131017516`
原始查询	`SmilChr03G000912`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT1G58390` (AT1G58390) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=30.8; qcov=0.883; evalue=1.13e-58; confidence=low
Rice	`Os01g0547000` - identity=27; qcov=0.849; evalue=3.14e-50; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017516

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057802256.1`
2	Cell membrane	细胞膜	0.60000	`XP_057802256.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802256.1`
4	Nucleus	细胞核	0.00000	`XP_057802256.1`
5	Chromosome	染色体	0.00000	`XP_057802256.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10442576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr3:10442588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B85
`Chr3:10442655`	`C`	`CCG`	2bp_insertion	frameshift_variant	2	B108,B56
`Chr3:10442655`	`C`	`CCG`	2bp_insertion	CDS_variant	2	B108,B56
`Chr3:10442659`	`CTA`	`C`	2bp_deletion	frameshift_variant	2	B108,B56
`Chr3:10442659`	`CTA`	`C`	2bp_deletion	CDS_variant	2	B108,B56
`Chr3:10442747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B17,C47,C87
`Chr3:10442772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B24,C72,D1,D2
`Chr3:10442793`	`ATG`	`A`	2bp_deletion	frameshift_variant	6	B107,B81,C55,C72,D1,D2
`Chr3:10442808`	`T`	`TG`	1bp_insertion	frameshift_variant	1	A2
`Chr3:10442808`	`T`	`TG`	1bp_insertion	CDS_variant	1	A2
`Chr3:10442819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B117,B23,C13,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802256.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802257.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802258.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802259.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802260.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802261.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802262.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802263.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802264.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802265.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802266.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802267.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802268.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

XP_057802270.1

847 aa

424

847

NB-ARC

LRR_14

PF00931 NB-ARC 165-319 aa PF23598 LRR_14 530-800 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802256.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802256.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802257.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802257.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802258.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802258.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802259.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802259.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802260.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802260.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802261.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802261.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802262.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802262.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802263.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802263.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802264.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802264.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802265.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802265.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802266.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802266.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802267.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802267.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802268.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802268.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region
`XP_057802270.1`	Pfam	`PF00931`	NB-ARC	Domain	165	319	1.6e-28	100.1	NB-ARC domain
`XP_057802270.1`	Pfam	`PF23598`	LRR_14	Repeat	530	800	1.8e-32	113.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA

XM_057946284.1
GCTTCTTCAACTGAGCATCTAATAAATTATTCACAACTTTCTCACACAAAATCCCTAATTTCGAAAAAAAAAAAAAAAAACATTCTAAATCCGTAATTTTGCTCGAACGAAATTCACTATTCAGAGCTCCAAATCCAATCACAGTAGACACCGCCTTCCGTCGCAAGCAGCTAAGCTGGCCAGAGACAAGCTAAGATAAGGAGAGAGGGAGGATTAAATCGGAAAGTTGATCGAGACGAGCAGAGGTAAGAAGAAAATTA...

XM_057946285.1
GCTTCTTCAACTGAGCATCTAATAAATTATTCACAACTTTCTCACACAAAATCCCTAATTTCGAAAAAAAAAAAAAAAAACATTCTAAATCCGTAATTTTGCTCGAACGAAATTCACTATTCAGAGCTCCAAATCCAATCACAGTAGACACCGCCTTCCGTCGCAAGCAGCTAAGCTGGCCAGAGACAAGCTAAGATAAGGAGAGAGGGAGGATTAAATCGGAAAGTTGATCGAGACGAGCAGAGGTAAGAAGAAAATTA...

CDS

14 records

下载 CDS FASTA

LOC131017516
ATGCCGAGCAGAAAGAAGAGAAATAGAAAAAGGTTTGGTCGAAGCAGAAAAAGGTCGGAGGCCCTCCTCTTATCGGTGATACAGAAGCTTGACATTAATTATCGACAGGATGAAACAAATAAGGATGAAATTGTTTTAATGTTTCTCGATAAGGAAATAGAAAGGGTAATTAGAGAGATGAAAGAGATTCTGGATATTGTGAGGGATAAGAAATTGGAAGAGAGAAGCCTAGATTTTTTTGTATATGACCTTGTTGACGT...

Protein

14 records

下载 Protein FASTA

XP_057802256.1
MPSRKKRNRKRFGRSRKRSEALLLSVIQKLDINYRQDETNKDEIVLMFLDKEIERVIREMKEILDIVRDKKLEERSLDFFVYDLVDVANDALYLYKQREDNYIFYESIHRWIGEIKKQMLKLGDDESNMRSSENVEDDTYVVGLDEDVKMLLRKSIIGGGEYSKNILIKGMSGIGKTTLAREIYNHPTVIERFKHRAWVSNSTNFTMNELLIKLIQQVDPHNLHTSSLLENMDNRRLRDLLRQHLKGKRYLIVLDDVPKQ...

XP_057802257.1
MPSRKKRNRKRFGRSRKRSEALLLSVIQKLDINYRQDETNKDEIVLMFLDKEIERVIREMKEILDIVRDKKLEERSLDFFVYDLVDVANDALYLYKQREDNYIFYESIHRWIGEIKKQMLKLGDDESNMRSSENVEDDTYVVGLDEDVKMLLRKSIIGGGEYSKNILIKGMSGIGKTTLAREIYNHPTVIERFKHRAWVSNSTNFTMNELLIKLIQQVDPHNLHTSSLLENMDNRRLRDLLRQHLKGKRYLIVLDDVPKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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