当前解析结果
SmilChr03G000914| 统一新 Gene ID | SmilChr03G000914 |
|---|---|
| 名称 | SmilChr03G000914 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10461479 - 10467262 / + |
| NCBI Gene ID | LOC131017507 |
|---|---|
| GeneID | 131017507 |
| locus_tag | - |
| NCBI Name | LOC131017507 |
| 原始查询 | SmilChr03G000914 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.8; qcov=0.91; evalue=9.93e-66; confidence=low |
| Rice | Os10g0358200- identity=26.7; qcov=0.938; evalue=1.15e-57; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017507 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057802246.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802246.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802246.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802246.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802246.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10464234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B2,C37,D4 |
Chr3:10464274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B132,C22 |
Chr3:10464309 |
AGG |
A |
2bp_deletion | frameshift_variant | 1 | A25 |
Chr3:10464309 |
AGG |
A |
2bp_deletion | CDS_variant | 1 | A25 |
Chr3:10464312 |
ATG |
* |
2bp_deletion | CDS_variant | 3 | B109,B55,C31 |
Chr3:10464341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:10464377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B82 |
Chr3:10464382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:10464406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr3:10464411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B31,B48,B67 |
Chr3:10464439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,C10,C21,C8 |
Chr3:10464480 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | A18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802246.1PF00931
NB-ARC 185-344 aa
PF23598
LRR_14 560-858 aa
PF13855
LRR_8 584-638 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802246.1 |
Pfam | PF00931 |
NB-ARC | Domain | 185 | 344 | 2.3e-26 | 93.1 | NB-ARC domain |
XP_057802246.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 560 | 858 | 5.1e-36 | 124.9 | Leucine-rich repeat region |
XP_057802246.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 584 | 638 | 1.2e-11 | 44.9 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。