当前解析结果
SmilChr03G000924| 统一新 Gene ID | SmilChr03G000924 |
|---|---|
| 名称 | SmilChr03G000924 |
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10576380 - 10579464 / + |
| NCBI Gene ID | LOC131017519 |
|---|---|
| GeneID | 131017519 |
| locus_tag | - |
| NCBI Name | LOC131017519 |
| 原始查询 | SmilChr03G000924 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 产物 | putative inactive disease susceptibility protein LOV1 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.4; qcov=0.905; evalue=6.08e-52; confidence=low |
| Rice | Os01g0547000- identity=26.6; qcov=0.896; evalue=1.04e-50; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017519 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057802274.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057802274.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802274.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802274.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802274.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10576581 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A2,B15,B3,B47,C53,C86 |
Chr3:10576582 |
T |
TA |
1bp_insertion | frameshift_variant | 28 | A18,B101,B104,B125,B127,B129,B139,B17,B26,B34,B35,B5,B57,B59,B6,B66,B67,B87,B89,B90,B92,C10,C2,C21,C29,C46,C6,C8 |
Chr3:10576606 |
ATC |
* |
2bp_deletion | CDS_variant | 1 | B74 |
Chr3:10576722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:10576737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:10576759 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | C40,D6 |
Chr3:10576759 |
T |
TC |
1bp_insertion | CDS_variant | 2 | C40,D6 |
Chr3:10576771 |
TAC |
* |
2bp_deletion | CDS_variant | 1 | D6 |
Chr3:10576774 |
TGC |
* |
2bp_deletion | CDS_variant | 1 | D6 |
Chr3:10576779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:10576786 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | C40,D6 |
Chr3:10576786 |
AC |
A |
1bp_deletion | CDS_variant | 2 | C40,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802274.1PF00931
NB-ARC 154-312 aa
PF23598
LRR_14 522-770 aa
PF13855
LRR_8 549-602 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802274.1 |
Pfam | PF00931 |
NB-ARC | Domain | 154 | 312 | 1.7e-26 | 93.6 | NB-ARC domain |
XP_057802274.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 522 | 770 | 6.2e-28 | 98.3 | Leucine-rich repeat region |
XP_057802274.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 549 | 602 | 6.8e-11 | 42.5 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。