当前解析结果
SmilChr03G000939| 统一新 Gene ID | SmilChr03G000939 |
|---|---|
| 名称 | SmilChr03G000939 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10680830 - 10685763 / + |
| NCBI Gene ID | LOC131017530 |
|---|---|
| GeneID | 131017530 |
| locus_tag | - |
| NCBI Name | LOC131017530 |
| 原始查询 | SmilChr03G000939 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.9; qcov=1.03; evalue=2.46e-67; confidence=low |
| Rice | Os10g0136100- identity=29.1; qcov=0.99; evalue=7.09e-60; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017530 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802298.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057802297.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802298.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802298.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802298.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10682741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B108,C23,C65 |
Chr3:10682874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:10682886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:10682919 |
CT |
C |
1bp_deletion | frameshift_variant | 4 | A25,B40,C60,D11 |
Chr3:10682919 |
CT |
C |
1bp_deletion | CDS_variant | 4 | A25,B40,C60,D11 |
Chr3:10682939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B108,C23,C65 |
Chr3:10682962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B27,B62,B79,B94,C28 |
Chr3:10683009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B108,C23,C65 |
Chr3:10683017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:10683051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B40,C60 |
Chr3:10683071 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 1 | C18 |
Chr3:10683071 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802297.1PF13401
AAA_22 132-225 aa
PF00931
NB-ARC 132-285 aa
PF23598
LRR_14 497-767 aa
PF13855
LRR_8 524-577 aa
XP_057802298.1PF13401
AAA_22 44-137 aa
PF00931
NB-ARC 44-197 aa
PF23598
LRR_14 409-679 aa
PF13855
LRR_8 436-489 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802297.1 |
Pfam | PF13401 |
AAA_22 | Domain | 132 | 225 | 2.7e-08 | 34.9 | AAA domain |
XP_057802297.1 |
Pfam | PF00931 |
NB-ARC | Domain | 132 | 285 | 2.2e-26 | 93.2 | NB-ARC domain |
XP_057802297.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 497 | 767 | 7.6e-36 | 124.3 | Leucine-rich repeat region |
XP_057802297.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 524 | 577 | 4.7e-09 | 36.6 | Leucine rich repeat |
XP_057802298.1 |
Pfam | PF13401 |
AAA_22 | Domain | 44 | 137 | 2.5e-08 | 35.0 | AAA domain |
XP_057802298.1 |
Pfam | PF00931 |
NB-ARC | Domain | 44 | 197 | 2.4e-26 | 93.1 | NB-ARC domain |
XP_057802298.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 409 | 679 | 6.8e-36 | 124.5 | Leucine-rich repeat region |
XP_057802298.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 436 | 489 | 2.6e-09 | 37.4 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。