Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000940`

染色体: Chr03 坐标: 10687923-10695268 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000940`
名称	SmilChr03G000940
描述	disease resistance RPP8-like protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10687923 - 10695268 / `+`

ID 对照

NCBI Gene ID	`LOC131017528`
GeneID	`131017528`
locus_tag	`-`
NCBI Name	`LOC131017528`
原始查询	`SmilChr03G000940`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance RPP8-like protein 3
产物	disease resistance RPP8-like protein 3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.9; qcov=1.07; evalue=7.61e-69; confidence=low
Rice	`Os01g0547000` - identity=26.6; qcov=0.904; evalue=2.6e-54; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017528

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057802295.1`
2	Cytosol	细胞质基质	0.40000	`XP_057802295.1`
3	Cytoplasm	细胞质	0.20000	`XP_057802295.1`
4	Nucleus	细胞核	0.00000	`XP_057802295.1`
5	Chromosome	染色体	0.00000	`XP_057802295.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10692706`	`A`	`AT`	1bp_insertion	frameshift_variant	3	A25,B40,C60
`Chr3:10692706`	`A`	`AT`	1bp_insertion	CDS_variant	3	A25,B40,C60
`Chr3:10692711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B49,B60,C52
`Chr3:10692712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C43
`Chr3:10692730`	`GAC`	`G`	2bp_deletion	frameshift_variant	3	B106,B75,C43
`Chr3:10692730`	`GAC`	`G`	2bp_deletion	CDS_variant	3	B106,B75,C43
`Chr3:10692738`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B75,C43
`Chr3:10692738`	`AG`	`A`	1bp_deletion	CDS_variant	2	B75,C43
`Chr3:10692740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,B65,C6
`Chr3:10692759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr3:10692784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B40,C13,C60
`Chr3:10692792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B106,B75,C43,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802295.1

821 aa

410

821

NB-ARC

LRR_14

PF00931 NB-ARC 120-291 aa PF23598 LRR_14 508-794 aa

XP_057802296.1

821 aa

410

821

NB-ARC

LRR_14

PF00931 NB-ARC 120-291 aa PF23598 LRR_14 508-794 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802295.1`	Pfam	`PF00931`	NB-ARC	Domain	120	291	6.8e-28	98.1	NB-ARC domain
`XP_057802295.1`	Pfam	`PF23598`	LRR_14	Repeat	508	794	1.1e-32	113.9	Leucine-rich repeat region
`XP_057802296.1`	Pfam	`PF00931`	NB-ARC	Domain	120	291	6.8e-28	98.1	NB-ARC domain
`XP_057802296.1`	Pfam	`PF23598`	LRR_14	Repeat	508	794	1.1e-32	113.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946313.1
GTCAACAGTAGTTTGTGCATCCTGAGAAACGTAGGATGCATGTGGGTATGAAGGTGGAAACATGCACGATGCTTCTCATTGGAAACAAAGAAACATATAATAATATATAGCAAAATTCATCTATCAATTAATATTCATTTCAGGTTTTGTTTTGACTTGAAAGATATCACATTCTACCATTCAAATCAAAGGTTTTATTGGGAAGAAGCTGGGAGGATTCAATCAGAAAGTCCATCGAGACGAGCAAAGATAAGAAGAGA...

XM_057946312.1
GTCAACAGTAGTTTGTGCATCCTGAGAAACGTAGGATGCATGTGGGTATGAAGGTGGAAACATGCACGATGCTTCTCATTGGAAACAAAGAAACATATAATAATATATAGCAAAATTCATCTATCAATTAATATTCATTTCAGGTTTTGTTTTGACTTGAAAGATATCACATTCTACCATTCAAATCAAAGGTTTTATTGGGAAGAAGCTGGGAGGATTCAATCAGAAAGTCCATCGAGACGAGCAAAGATAAGAAGAGA...

CDS

2 records

下载 CDS FASTA

LOC131017528
ATGTCGGAGGCCCTCCTCTTATCAGTGATAGAGAAGCTGGACATTAATTATCGAGAGGACACGAAAGCAAATGAGGAAAAGGAAAGGCTAATTAAAGAGATGAGAGAGATTCTGGATATCATGAGGGATAAGAAATTGGAAGATGGGAGAAGCCTAAATTGTTTAGTATCTGACCTTGTCCAGATGGCTGACGACGCCCTCCACCTCTACAGCATGAACTGGTTGAGACCATCTGAGTCCATCCATAGTTGGATCGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057802295.1
MSEALLLSVIEKLDINYREDTKANEEKERLIKEMREILDIMRDKKLEDGRSLNCLVSDLVQMADDALHLYSMNWLRPSESIHSWIGEIKKQMLKLGDDESNIRSSQNVEDDKYVVGLEEDVEMLLRRMIVGGGFPKNVLIKGMCGIGKTTLAREIYNHPTVVERFERRAWVSNSTHFTLKELLIKLIQQVVPKNLHTSSLLENMDNRSLRDMLCQHLEGTRYFIVLDDVPKQMHLKSFLEALPQEYTGSRLLATSHTTSI...

XP_057802296.1
MSEALLLSVIEKLDINYREDTKANEEKERLIKEMREILDIMRDKKLEDGRSLNCLVSDLVQMADDALHLYSMNWLRPSESIHSWIGEIKKQMLKLGDDESNIRSSQNVEDDKYVVGLEEDVEMLLRRMIVGGGFPKNVLIKGMCGIGKTTLAREIYNHPTVVERFERRAWVSNSTHFTLKELLIKLIQQVVPKNLHTSSLLENMDNRSLRDMLCQHLEGTRYFIVLDDVPKQMHLKSFLEALPQEYTGSRLLATSHTTSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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