Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000950`

染色体: Chr03 坐标: 10758041-10764405 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000950`
名称	SmilChr03G000950
描述	uncharacterized SmilChr03G000950
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10758041 - 10764405 / `+`

ID 对照

NCBI Gene ID	`LOC131018310`
GeneID	`131018310`
locus_tag	`-`
NCBI Name	`LOC131018310`
原始查询	`SmilChr03G000950`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0142900; species=rice; confidence=medium
产物	hit=Os12g0142900; species=rice; confidence=medium
Arabidopsis	`ATMG00860` - identity=41.2; qcov=0.121; evalue=2.43e-30; confidence=weak
Rice	`Os12g0142900` - identity=38.9; qcov=0.475; evalue=2.55e-127; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00078 (RVT_1); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1)
InterPro	-
eggNOG	-
NR	GeneID:131018310

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057803018.1`
2	Cytosol	细胞质基质	1.00000	`XP_057803018.1`
3	Nucleus	细胞核	0.40000	`XP_057803018.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057803018.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057803018.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10758758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr3:10758821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:10758911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B51,B72,C69
`Chr3:10758943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:10758953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr3:10758974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:10758991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr3:10759045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr3:10759153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B23,C18
`Chr3:10759178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B136,D10
`Chr3:10759624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr3:10759965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803018.1

1220 aa

610

1220

Ty3_capsid

PEG10_N-capsid

RVP_2

Asp_protease_2

gag-asp_proteas

PRO_PEG10-RTL1

RVT_1

RT_RNaseH_2

RT_RNaseH

PF19259 Ty3_capsid 50-216 aa PF03732 PEG10_N-capsid 51-129 aa PF08284 RVP_2 393-520 aa PF13650 Asp_protease_2 418-502 aa PF13975 gag-asp_proteas 418-504 aa PF30863 PRO_PEG10-RTL1 424-519 aa PF00078 RVT_1 652-811 aa PF17919 RT_RNaseH_2 875-967 aa PF17917 RT_RNaseH 902-999 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803018.1`	Pfam	`PF19259`	Ty3_capsid	Domain	50	216	3e-10	40.6	Ty3 transposon capsid-like protein
`XP_057803018.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	51	129	3.4e-12	47.3	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057803018.1`	Pfam	`PF08284`	RVP_2	Domain	393	520	6.2e-28	98.0	Retroviral aspartyl protease
`XP_057803018.1`	Pfam	`PF13650`	Asp_protease_2	Domain	418	502	7.4e-11	43.3	Aspartyl protease
`XP_057803018.1`	Pfam	`PF13975`	gag-asp_proteas	Domain	418	504	3.5e-10	41.0	gag-polyprotein putative aspartyl protease
`XP_057803018.1`	Pfam	`PF30863`	PRO_PEG10-RTL1	Domain	424	519	3.9e-10	40.8	PEG10/RTL1 protease domain
`XP_057803018.1`	Pfam	`PF00078`	RVT_1	Domain	652	811	9.2e-39	134.1	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057803018.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	875	967	7.3e-32	110.1	RNase H-like domain found in reverse transcriptase
`XP_057803018.1`	Pfam	`PF17917`	RT_RNaseH	Domain	902	999	6.7e-33	113.7	RNase H-like domain found in reverse transcriptase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947035.1
TAAGTTTTAACAGGAGCAGAACTCGATGAGTTAAAGAGTAACTATAGAAATGATAGTATGTCCTTATTGCATTTTAATGCGCTGACAACTTATGTTTTGACCTAATAGAATGCCGCCAAAACGAGGACGACCAAGAGGAGGGGGCAGGATTCCCCGAAATGAAAGAAGAGACCCAGAAACAGTGCCAGAACCAGAACCCGAAATAGTTCAACCACCTGTTCAGCCAGAACGACGGATTGAAGAATTATTTTTGCGACAGA...

CDS

1 records

下载 CDS FASTA

LOC131018310
ATGCCGCCAAAACGAGGACGACCAAGAGGAGGGGGCAGGATTCCCCGAAATGAAAGAAGAGACCCAGAAACAGTGCCAGAACCAGAACCCGAAATAGTTCAACCACCTGTTCAGCCAGAACGACGGATTGAAGAATTATTTTTGCGACAGAACCCACCTACTTTCAACGGGACAGGAGACCCGGCAGAAGCTGAAACTTGGGTTCGCGCTATTGAACGCATTTTCAACTTCCTGCGTTGCACCGACCAAGAACGCCTGAC...

Protein

1 records

下载 Protein FASTA

XP_057803018.1
MPPKRGRPRGGGRIPRNERRDPETVPEPEPEIVQPPVQPERRIEELFLRQNPPTFNGTGDPAEAETWVRAIERIFNFLRCTDQERLTCMSFQLTGSADFWWEARMKTMTAEQLENLTWEQFKAGIYDKYIPKSYRKKKEAEFYNLKQGKMSVTQYDRMFCDMSRYAPEQVDTDEKMAEKFCAGLRHEIRMALASHGGLSYTESLSRALDIEAAMPGERPATVPTPAPSHDQNHNQNFRGKRRWDNSNPNQGEKRPWQGRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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