Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000951`

染色体: Chr03 坐标: 10768683-10776552 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000951`
名称	SmilChr03G000951
描述	putative disease resistance RPP13-like protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10768683 - 10776552 / `+`

ID 对照

NCBI Gene ID	`LOC131017546`
GeneID	`131017546`
locus_tag	`-`
NCBI Name	`LOC131017546`
原始查询	`SmilChr03G000951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance RPP13-like protein 3
产物	putative disease resistance RPP13-like protein 3
Arabidopsis	`AT3G50950` (ZAR1) HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=30.4; qcov=0.816; evalue=4.38e-32; confidence=low
Rice	`Os10g0136100` - identity=31.7; qcov=0.653; evalue=3.14e-33; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:131017546

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802322.1`
2	Cytosol	细胞质基质	0.20000	`XP_057802321.1`
3	Nucleus	细胞核	0.00000	`XP_057802321.1`
4	Chromosome	染色体	0.00000	`XP_057802321.1`
5	Centromere	着丝粒	0.00000	`XP_057802321.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10768752`	`A`	`ATG`	2bp_insertion	stop_gained,frameshift_variant	46	A16,A20,A23,A24,A7,B101,B102,B103,B107,B113,B114,B115,B124,B125,B132,B23,B25,B54,B57,B60,B63,B66,B70,B71,B72,B77,B79,B81,B82,B83,B90,B92,B97,C18,C2,C25,C3,C31,C40,C55,C68,C69,C9,D1,D3,D8
`Chr3:10768900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,C11,C2
`Chr3:10768911`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B135,B140,C48,D11
`Chr3:10768911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B140,C48,D11
`Chr3:10768926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B39,C17
`Chr3:10768955`	`TG`	`T`	1bp_deletion	frameshift_variant	3	A1,C17,C21
`Chr3:10768955`	`TG`	`T`	1bp_deletion	CDS_variant	3	A1,C17,C21
`Chr3:10768967`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A21,B108,C23,C65
`Chr3:10768967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B108,C23,C65
`Chr3:10768968`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A21,B108,C23,C65
`Chr3:10768968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B108,C23,C65
`Chr3:10769001`	`C`	`CA`	1bp_insertion	frameshift_variant	26	A8,B102,B123,B125,B129,B133,B137,B27,B3,B47,B48,B56,B57,B66,B84,B92,B94,B96,C16,C2,C21,C22,C3,C34,C84,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802321.1

488 aa

244

488

NB-ARC

PF00931 NB-ARC 198-353 aa

XP_057802322.1

435 aa

218

435

NB-ARC

PF00931 NB-ARC 145-300 aa

XP_057802323.1

435 aa

218

435

NB-ARC

PF00931 NB-ARC 145-300 aa

XP_057802324.1

435 aa

218

435

NB-ARC

PF00931 NB-ARC 145-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802321.1`	Pfam	`PF00931`	NB-ARC	Domain	198	353	4.8e-28	98.6	NB-ARC domain
`XP_057802322.1`	Pfam	`PF00931`	NB-ARC	Domain	145	300	3.8e-28	98.9	NB-ARC domain
`XP_057802323.1`	Pfam	`PF00931`	NB-ARC	Domain	145	300	3.8e-28	98.9	NB-ARC domain
`XP_057802324.1`	Pfam	`PF00931`	NB-ARC	Domain	145	300	3.8e-28	98.9	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009099648.1
GTTAATGCGTGTGAAACGATAAGTCAGCAGTAGTTTGTGCTTCTTGAGAAAAGCAGGGTGCACGTGGGTATGAAGGTTTTGTTTTGGATTGAAAGATATCACATTCTACCATTCAAATCAAAGGTTTTATTGGGAAGAAGCTGGGAGGATTCAATCAGAAAGTCCATCGAGACGAGCAAAGATAAGAAGATAAATCACAAAAAAGGGCAATTTGGTGGAAGCAGAAACATGTCGGAGGCCCTCCTCTTATCGCTGATACA...

XM_057946340.1
GTTAATGCGTGTGAAACGATAAGTCAGCAGTAGTTTGTGCTTCTTGAGAAAAGCAGGGTGCACGTGGGTATGAAGGTTTTGTTTTGGATTGAAAGATATCACATTCTACCATTCAAATCAAAGGTTTTATTGGGAAGAAGCTGGGAGGATTCAATCAGAAAGTCCATCGAGACGAGCAAAGATAAGAAGATAAATCACAAAAAAGGTTTTTGGAAATCTTCTGCTTCACCAATTTTTATTTAAAAGAGAGACCAGCAGAG...

CDS

4 records

下载 CDS FASTA

LOC131017546
ATGAAGGTTTTGTTTTGGATTGAAAGATATCACATTCTACCATTCAAATCAAAGGTTTTATTGGGAAGAAGCTGGGAGGATTCAATCAGAAAGTCCATCGAGACGAGCAAAGATAAGAAGATAAATCACAAAAAAGGGCAATTTGGTGGAAGCAGAAACATGTCGGAGGCCCTCCTCTTATCGCTGATACACAAGCTCGACATTAATTATCTAATGTATAAACCGTATTGGGAAATAAATGAGGAAAAGGAAAGGGTAAT...

LOC131017546
ATGTCGGAGGCCCTCCTCTTATCGCTGATACACAAGCTCGACATTAATTATCTAATGTATAAACCGTATTGGGAAATAAATGAGGAAAAGGAAAGGGTAATTAAAGAGATGAGAGAGATTGTGGATATTGTGAGGGACAAGAAATTGGAAGAGGGCAAAACCCTAAATTTTTTAGTATCTGACCTTGTCAACGTGATTGAAGATGCAGTCGACCTTTTCAAACGAGGCAAAACCTATCATACATACTATGGATCCATCCA...

Protein

4 records

下载 Protein FASTA

XP_057802321.1
MKVLFWIERYHILPFKSKVLLGRSWEDSIRKSIETSKDKKINHKKGQFGGSRNMSEALLLSLIHKLDINYLMYKPYWEINEEKERVIKEMREIVDIVRDKKLEEGKTLNFLVSDLVNVIEDAVDLFKRGKTYHTYYGSIHTWIGEIKTRLFKLGDDGAEKRSSENVEDDKYVVGLDEDVQMLLRSKIFGGKGYRSNPIVVIKGMCGIGKTTLAREIYNHPTVVERFECRLWVSNSTDLTIKELLIKLIQQVEDAENLRTS...

XP_057802322.1
MSEALLLSLIHKLDINYLMYKPYWEINEEKERVIKEMREIVDIVRDKKLEEGKTLNFLVSDLVNVIEDAVDLFKRGKTYHTYYGSIHTWIGEIKTRLFKLGDDGAEKRSSENVEDDKYVVGLDEDVQMLLRSKIFGGKGYRSNPIVVIKGMCGIGKTTLAREIYNHPTVVERFECRLWVSNSTDLTIKELLIKLIQQVEDAENLRTSSLLEDMDNRSLRDMLSQHLQGTRYLIVLDDVPKQMRLKSFLEALPQEFHESRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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