当前解析结果
SmilChr03G000974| 统一新 Gene ID | SmilChr03G000974 |
|---|---|
| 名称 | SmilChr03G000974 |
| 描述 | probable disease resistance RPP8-like protein 2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 11031732 - 11056910 / + |
| NCBI Gene ID | LOC131017515 |
|---|---|
| GeneID | 131017515 |
| locus_tag | - |
| NCBI Name | LOC131017515 |
| 原始查询 | SmilChr03G000974 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance RPP8-like protein 2 |
| 产物 | probable disease resistance RPP8-like protein 2 |
| Arabidopsis | AT1G59620 (CW9)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842252] identity=28.1; qcov=0.903; evalue=1.8e-55; confidence=low |
| Rice | Os10g0358200- identity=26.8; qcov=0.912; evalue=1.39e-45; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017515 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057802253.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802253.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057802253.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802253.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802253.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:11054142 |
T |
TG |
1bp_insertion | frameshift_variant | 33 | A14,A18,A19,B112,B128,B139,B16,B18,B19,B30,B36,B42,B43,B52,B63,B74,B83,B88,B89,B93,B95,C13,C20,C39,C4,C50,C54,C59,C65,C70,C73,C74,C82 |
Chr3:11054145 |
G |
GAT |
2bp_insertion | frameshift_variant | 33 | A14,A18,A19,B112,B128,B139,B16,B18,B19,B30,B36,B42,B43,B52,B63,B74,B83,B88,B89,B93,B95,C13,C20,C39,C4,C50,C54,C59,C65,C70,C73,C74,C82 |
Chr3:11054287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:11054334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,B125,B45,C40 |
Chr3:11054421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:11054431 |
C |
CAG |
2bp_insertion | frameshift_variant | 3 | B37,C77,C9 |
Chr3:11054431 |
C |
CAG |
2bp_insertion | CDS_variant | 3 | B37,C77,C9 |
Chr3:11054443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:11054475 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | C64,C66 |
Chr3:11054475 |
A |
AC |
1bp_insertion | CDS_variant | 2 | C64,C66 |
Chr3:11054515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B19,B67 |
Chr3:11054537 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802253.1PF00931
NB-ARC 168-324 aa
PF23598
LRR_14 540-807 aa
XP_057802255.1PF00931
NB-ARC 168-231 aa
PF23598
LRR_14 505-772 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802253.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 324 | 4.9e-28 | 98.6 | NB-ARC domain |
XP_057802253.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 807 | 3.3e-28 | 99.2 | Leucine-rich repeat region |
XP_057802255.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 231 | 2.5e-17 | 63.7 | NB-ARC domain |
XP_057802255.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 505 | 772 | 1.3e-28 | 100.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。