当前解析结果
SmilChr03G000984| 统一新 Gene ID | SmilChr03G000984 |
|---|---|
| 名称 | SmilChr03G000984 |
| 描述 | uncharacterized SmilChr03G000984 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 11148593 - 11149969 / + |
| NCBI Gene ID | LOC131018321 |
|---|---|
| GeneID | 131018321 |
| locus_tag | - |
| NCBI Name | LOC131018321 |
| 原始查询 | SmilChr03G000984 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0597250; species=rice; confidence=high |
| 产物 | hit=Os06g0597250; species=rice; confidence=high |
| Arabidopsis | AT2G13770 (AT2G13770)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:815861] identity=47.3; qcov=0.282; evalue=8.79e-36; confidence=weak |
| Rice | Os06g0597250- identity=49.5; qcov=0.934; evalue=3.93e-145; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF28509 (DUF8418) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018321 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803028.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057803028.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057803028.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803028.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803028.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:11148621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C24,C30,C63,C73 |
Chr3:11148626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B26,B79,C43 |
Chr3:11148671 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | A16,B73,C30 |
Chr3:11148671 |
GA |
G |
1bp_deletion | CDS_variant | 3 | A16,B73,C30 |
Chr3:11148676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B58,C30,C52 |
Chr3:11148680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B64,C24 |
Chr3:11148686 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B101,B24,B43,B66,B7,D5 |
Chr3:11148692 |
C |
T |
EMS_canonical_SNV | stop_gained | 141 | A10,A11,A16,A19,A2,A20,A21,A23,A7,A8,A9,B10,B100,B101,B102,B105,B107,B112,B113,B119,B120,B123,B126,B127,B128,B129,B13,B130,B136,B138,B140,B15,B16,B17,B18,B2,B20,B24,B26,B28,B3,B30,B32,B36,B37,B38,B39,B4,B41,B44,B46,B48,B49,B50,B55,B56,B57,B58,B59,B6,B62,B65,B66,B67,B68,B70,B72,B73,B74,B79,B8,B80,B84,B86,B88,B92,B94,B95,B96,B99,C1,C10,C11,C13,C14,C19,C20,C21,C23,C26,C28,C3,C30,C31,C33,C34,C35,C37,C4,C40,C41,C43,C45,C46,C48,C49,C5,C50,C51,C52,C53,C54,C55,C60,C62,C63,C64,C66,C67,C69,C7,C71,C72,C73,C74,C77,C78,C79,C8,C80,C81,C82,C83,C86,C87,C9,D2,D3,D5,D6,D8 |
Chr3:11148695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B24,B85,D5 |
Chr3:11148713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B108,B119 |
Chr3:11148723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B58,C8 |
Chr3:11148728 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B132,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803028.1PF28509
DUF8418 73-111 aa
PF04827
Plant_tran 181-383 aa
PF13359
DDE_Tnp_4 210-373 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803028.1 |
Pfam | PF28509 |
DUF8418 | Domain | 73 | 111 | 2.6e-16 | 59.8 | Domain of unknown function (DUF8418) |
XP_057803028.1 |
Pfam | PF04827 |
Plant_tran | Family | 181 | 383 | 2.2e-104 | 348.2 | Plant transposon protein |
XP_057803028.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 210 | 373 | 9.7e-11 | 42.2 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。