Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000988`

染色体: Chr03 坐标: 11194054-11216604 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000988`
名称	SmilChr03G000988
描述	protein ILITYHIA-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	11194054 - 11216604 / `+`

ID 对照

NCBI Gene ID	`LOC131017489`
GeneID	`131017489`
locus_tag	`-`
NCBI Name	`LOC131017489`
原始查询	`SmilChr03G000988`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ILITYHIA-like
产物	protein ILITYHIA-like
Arabidopsis	`AT1G64790` (ILA) ILITYHIA [Source:NCBI gene (formerly Entrezgene);Acc:842787] identity=70.1; qcov=1; evalue=0; confidence=high
Rice	`Os03g0721200` - identity=76.2; qcov=0.474; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0005829 (cytosol); GO:0006417 (regulation of translation); GO:0019887 (protein kinase regulator activity); GO:0034198 (cellular response to amino acid starvation)
KEGG	-
Pfam	PF02985 (HEAT); PF13513 (HEAT_EZ); PF23271 (HEAT_GCN1); PF24984 (HEAT_EF3_GNC1); PF24987 (HEAT_EF3_N); PF24993 (GNC1_N); PF25786 (HEAT_GCN1_C); PF25801 (HEAT_GCN1_C_2); PF26715 (HEAT_GCN1_2)
InterPro	-
eggNOG	-
NR	GeneID:131017489

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057802220.1`
2	Cytosol	细胞质基质	0.80000	`XP_057802220.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057802220.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057802220.1`
5	Nucleus	细胞核	0.00000	`XP_057802220.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:11194146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C71,C8
`Chr3:11194149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,C32,C68,D1
`Chr3:11194169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C37
`Chr3:11194190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B18,B42,C37,C82
`Chr3:11194212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:11194237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B77,C26,C71,C8
`Chr3:11194246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:11196600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,C38,C70
`Chr3:11196651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C4
`Chr3:11197151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,B58,C16,C46
`Chr3:11197173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:11198004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802220.1

2638 aa

1319

2638

GNC1_N

HEAT_GCN1_2

HEAT_EF3_N

HEAT_GCN1

HEAT_EF3_GNC1

HEAT_GCN1

HEAT_EF3_N

HEAT

HEAT_GCN1

HEAT_EZ

HEAT_GCN1_C_2

HEAT_GCN1_C

PF24993 GNC1_N 213-345 aa PF26715 HEAT_GCN1_2 1104-1299 aa PF24987 HEAT_EF3_N 1365-1532 aa PF23271 HEAT_GCN1 1416-1552 aa PF24984 HEAT_EF3_GNC1 1567-1664 aa PF23271 HEAT_GCN1 1644-1792 aa PF24987 HEAT_EF3_N 1688-1814 aa PF02985 HEAT 1748-1777 aa PF23271 HEAT_GCN1 1887-2034 aa PF23271 HEAT_GCN1 2046-2235 aa PF13513 HEAT_EZ 2296-2350 aa PF25801 HEAT_GCN1_C_2 2358-2608 aa PF25786 HEAT_GCN1_C 2456-2610 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802220.1`	Pfam	`PF24993`	GNC1_N	Repeat	213	345	9.6e-51	171.8	Stalled ribosome sensor GCN1 N-terminal
`XP_057802220.1`	Pfam	`PF26715`	HEAT_GCN1_2	Repeat	1104	1299	2.7e-78	263.5	Stalled ribosome sensor GCN1, HEAT repeats
`XP_057802220.1`	Pfam	`PF24987`	HEAT_EF3_N	Repeat	1365	1532	1.1e-90	302.8	EF3 N-terminal HEAT repeat
`XP_057802220.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	1416	1552	2.7e-98	328.4	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057802220.1`	Pfam	`PF24984`	HEAT_EF3_GNC1	Repeat	1567	1664	5.3e-43	146.3	Elongation factor 3/GNC1 HEAT repeat
`XP_057802220.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	1644	1792	2.7e-98	328.4	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057802220.1`	Pfam	`PF24987`	HEAT_EF3_N	Repeat	1688	1814	1.1e-90	302.8	EF3 N-terminal HEAT repeat
`XP_057802220.1`	Pfam	`PF02985`	HEAT	Repeat	1748	1777	3e-62	201.3	HEAT repeat
`XP_057802220.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	1887	2034	2.7e-98	328.4	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057802220.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	2046	2235	2.7e-98	328.4	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057802220.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	2296	2350	7.7e-54	180.0	HEAT-like repeat
`XP_057802220.1`	Pfam	`PF25801`	HEAT_GCN1_C_2	Repeat	2358	2608	1.1e-39	137.3	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057802220.1`	Pfam	`PF25786`	HEAT_GCN1_C	Repeat	2456	2610	1.7e-88	295.1	GCN1-like, C-terminal HEAT repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946237.1
ACTCCAAAGACTGAATTTTGTCCACTCAGATTCTAAGTCCTAAAACCCTAAGTTTGAACCCACGGCAGCTCATCCCAATCCGCTCCAATGGCGTCCAATCCCATCGACTCGCTCACGGCGATCGCTGCCACGGTCTCCACGCCGTCCACCAGCCGCCGCGTTCAGATCTTCCGCCACCGGATTCCGGCCATTCTCGACAATTTAGACTCTTTGCAGGTGACTGCTGAGTTTGTGTCGGTATTGGTTGATTTAGTTTTCCA...

CDS

1 records

下载 CDS FASTA

LOC131017489
ATGGCGTCCAATCCCATCGACTCGCTCACGGCGATCGCTGCCACGGTCTCCACGCCGTCCACCAGCCGCCGCGTTCAGATCTTCCGCCACCGGATTCCGGCCATTCTCGACAATTTAGACTCTTTGCAGGTGACTGCTGAGTTTGTGTCGGTATTGGTTGATTTAGTTTTCCAAACATTATCCATCTACGATGACCATGGATCAAGGAAAGCTGTGGATGAAGTTATTATTAAAGCCTTAACTAAAGACTTATTCATGAA...

Protein

1 records

下载 Protein FASTA

XP_057802220.1
MASNPIDSLTAIAATVSTPSTSRRVQIFRHRIPAILDNLDSLQVTAEFVSVLVDLVFQTLSIYDDHGSRKAVDEVIIKALTKDLFMKSFAATLVQAMERHSKFQSLTGGYRLLKWSCILLIHSQFATLSKNGLSRVAQAQALVLHMVMQGPFGVRRACRKTCFHLFTKSPNIYKAYMEELKDGRIPYKDSPELLYLMLDYANSYPSSFDKLKDLFLDLYVKSVLNAREKPTKGLSEAFLPLFTHMSHEDFKNTILPSSLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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