当前解析结果
SmilChr03G001017| 统一新 Gene ID | SmilChr03G001017 |
|---|---|
| 名称 | SmilChr03G001017 |
| 描述 | uncharacterized SmilChr03G001017 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 11707476 - 11708342 / + |
| NCBI Gene ID | LOC131018325 |
|---|---|
| GeneID | 131018325 |
| locus_tag | - |
| NCBI Name | LOC131018325 |
| 原始查询 | SmilChr03G001017 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=28.2; qcov=0.934; evalue=2.14e-18; confidence=low |
| Rice | Os12g0169300- identity=26.8; qcov=0.92; evalue=4.73e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14303 (NAM-associated) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018325 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803031.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803031.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803031.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803031.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803031.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:11707503 |
C |
T |
EMS_canonical_SNV | stop_gained | 69 | A10,A20,A5,A7,A9,B104,B106,B110,B113,B119,B124,B128,B135,B138,B33,B34,B43,B45,B46,B50,B51,B55,B58,B64,B68,B7,B72,B74,B75,B76,B77,B78,B80,B90,B97,B99,C13,C17,C18,C19,C21,C30,C37,C4,C40,C41,C43,C44,C45,C52,C55,C56,C57,C60,C61,C63,C64,C65,C66,C69,C7,C70,C72,C75,C76,C78,C81,C82,D3 |
Chr3:11707513 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | B43,B50,C64,C7,C81 |
Chr3:11707513 |
C |
CA |
1bp_insertion | CDS_variant | 5 | B43,B50,C64,C7,C81 |
Chr3:11707524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B124,B55 |
Chr3:11707529 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A14,C27 |
Chr3:11707529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C27 |
Chr3:11707539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B131,C30 |
Chr3:11707548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B131,B31,C30 |
Chr3:11707564 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A25,A7,B12,B133,B15,B22,B24,B37,B51,B60,B73,C32,C54 |
Chr3:11707565 |
G |
A |
EMS_canonical_SNV | stop_gained | 44 | A13,A16,A19,A4,A9,B105,B117,B12,B131,B136,B18,B19,B25,B3,B30,B32,B33,B35,B41,B44,B51,B53,B56,B63,B78,B89,B97,B99,C13,C33,C34,C36,C38,C46,C47,C54,C57,C59,C62,C72,C80,C86,D1,D4 |
Chr3:11707590 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B101,B131,B7,C13 |
Chr3:11707590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B131,B7,C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803031.1PF14303
NAM-associated 133-265 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803031.1 |
Pfam | PF14303 |
NAM-associated | Family | 133 | 265 | 1.7e-07 | 33.0 | No apical meristem-associated C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。