当前解析结果
SmilChr03G001029| 统一新 Gene ID | SmilChr03G001029 |
|---|---|
| 名称 | SmilChr03G001029 |
| 描述 | cytosolic sulfotransferase 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12008590 - 12009736 / - |
| NCBI Gene ID | LOC131017586 |
|---|---|
| GeneID | 131017586 |
| locus_tag | - |
| NCBI Name | LOC131017586 |
| 原始查询 | SmilChr03G001029 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic sulfotransferase 5-like |
| 产物 | cytosolic sulfotransferase 5-like |
| Arabidopsis | AT3G45070 (AT3G45070)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642] identity=51.4; qcov=0.966; evalue=9.18e-118; confidence=high |
| Rice | Os04g0526300- identity=47.5; qcov=0.975; evalue=2.63e-93; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation) |
| KEGG | - |
| Pfam | PF00685 (Sulfotransfer_1); PF13469 (Sulfotransfer_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017586 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057802375.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057802375.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057802375.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802375.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802375.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12008804 |
C |
T |
EMS_canonical_SNV | stop_gained | 19 | A13,B31,B34,B36,B41,B5,B50,B53,B57,B60,B61,B72,B86,C11,C28,C33,C65,C71,C8 |
Chr3:12008840 |
T |
TTA |
2bp_insertion | frameshift_variant | 44 | A13,A19,A4,A6,B109,B112,B124,B129,B131,B133,B14,B21,B29,B30,B32,B37,B38,B39,B51,B62,B64,B71,B73,B75,B76,B82,B84,B89,B91,B95,C12,C15,C21,C24,C32,C42,C43,C49,C52,C68,C77,C80,C84,D6 |
Chr3:12008913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B108,B126,C36 |
Chr3:12008932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr3:12009002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,C74 |
Chr3:12009048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:12009052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,D8 |
Chr3:12009133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B96 |
Chr3:12009166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:12009201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B130,B32,B62,C49 |
Chr3:12009214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr3:12009217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802375.1PF00685
Sulfotransfer_1 64-323 aa
PF13469
Sulfotransfer_3 149-248 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802375.1 |
Pfam | PF00685 |
Sulfotransfer_1 | Domain | 64 | 323 | 3.9e-76 | 256.6 | Sulfotransferase domain |
XP_057802375.1 |
Pfam | PF13469 |
Sulfotransfer_3 | Domain | 149 | 248 | 1.4e-09 | 39.2 | Sulfotransferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。