Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001043`

染色体: Chr03 坐标: 12151393-12152825 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001043`
名称	SmilChr03G001043
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12151393 - 12152825 / `+`

ID 对照

NCBI Gene ID	`LOC131017564`
GeneID	`131017564`
locus_tag	`-`
NCBI Name	`LOC131017564`
原始查询	`SmilChr03G001043`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=26.6; qcov=1.08; evalue=3.02e-13; confidence=low
Rice	`-` -
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017564

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802348.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802349.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802348.1`
4	Chromosome	染色体	0.00000	`XP_057802348.1`
5	Centromere	着丝粒	0.00000	`XP_057802348.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12151753`	`CG`	`C`	1bp_deletion	frameshift_variant	72	A1,A14,A19,A21,A24,A3,A5,A6,A8,B10,B102,B109,B113,B117,B12,B13,B131,B134,B136,B138,B16,B17,B18,B2,B20,B21,B25,B30,B33,B35,B36,B46,B48,B52,B54,B55,B57,B61,B62,B63,B64,B66,B68,B7,B83,B88,B89,B91,B99,C17,C25,C26,C37,C38,C5,C50,C54,C56,C6,C61,C62,C68,C70,C72,C73,C79,C81,C82,D1,D6,D8,D9
`Chr3:12151755`	`AAG`	`A`	2bp_deletion	frameshift_variant	76	A1,A14,A19,A21,A24,A3,A5,A6,A8,B10,B102,B109,B113,B117,B12,B13,B131,B134,B136,B138,B15,B16,B17,B18,B2,B20,B21,B25,B30,B33,B35,B36,B46,B48,B50,B52,B54,B55,B57,B61,B62,B63,B64,B66,B68,B7,B83,B88,B89,B91,B99,C16,C17,C25,C26,C27,C37,C38,C5,C50,C54,C56,C6,C61,C62,C68,C70,C72,C73,C79,C81,C82,D1,D6,D8,D9
`Chr3:12151804`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:12151869`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A21
`Chr3:12151869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:12151922`	`T`	`TA`	1bp_insertion	frameshift_variant	1	A9
`Chr3:12151922`	`T`	`TA`	1bp_insertion	CDS_variant	1	A9
`Chr3:12151950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,C62,D6
`Chr3:12151973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr3:12151981`	`CT`	`C`	1bp_deletion	frameshift_variant	3	B90,B92,C75
`Chr3:12151981`	`CT`	`C`	1bp_deletion	CDS_variant	3	B90,B92,C75
`Chr3:12152055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B119,B125,B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802348.1

387 aa

194

387

F-box

F-box-like

FBA_3

FBA_1

Beta-prop_KIB1-4

PF00646 F-box 44-83 aa PF12937 F-box-like 45-77 aa PF08268 FBA_3 139-321 aa PF07734 FBA_1 140-340 aa PF03478 Beta-prop_KIB1-4 141-325 aa

XP_057802349.1

254 aa

127

254

FBA_3

FBA_1

Beta-prop_KIB1-4

PF08268 FBA_3 8-188 aa PF07734 FBA_1 9-213 aa PF03478 Beta-prop_KIB1-4 10-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802348.1`	Pfam	`PF00646`	F-box	Domain	44	83	2.9e-13	49.8	F-box domain
`XP_057802348.1`	Pfam	`PF12937`	F-box-like	Domain	45	77	7.5e-09	35.9	F-box-like
`XP_057802348.1`	Pfam	`PF08268`	FBA_3	Repeat	139	321	1.4e-13	51.3	F-box associated beta propeller domain
`XP_057802348.1`	Pfam	`PF07734`	FBA_1	Repeat	140	340	3.8e-19	69.5	F-box associated beta propeller domain
`XP_057802348.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	141	325	7.4e-07	29.6	KIB1-4 beta-propeller
`XP_057802349.1`	Pfam	`PF08268`	FBA_3	Repeat	8	188	1.6e-13	51.1	F-box associated beta propeller domain
`XP_057802349.1`	Pfam	`PF07734`	FBA_1	Repeat	9	213	2.7e-19	70.0	F-box associated beta propeller domain
`XP_057802349.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	10	192	4.3e-07	30.4	KIB1-4 beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946365.1
GGAACTTCACCGCAGTTTATGAATTTTAGGGTTTATTTTGGTTCCATGCCTTTGAATCTCATGCGTAACCCTTTCTTTAAGAGAGAGACTTAACCGCACTGCCGCTTCTCCATAGTGACGCCGTCGAATGCCACCACACCCATACCATCATCTTCCTTGATTTTCTAAGATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGACGAAGAAGAG...

XM_057946366.1
GAATAAGAAGAAGACGAAGAAGAGGAAGAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTGTCAATATTGCCGGTGAAATCACTGTTGAGATTTAGTCGTTGCTGAGTGAAGCACCTATCAGTCGATATTCACTTGATGATGCGATGGCGATATTGCTGCCATATCAAAATTTGGGATGCTGTAATGGGCTGTTCTGCGTTCTCAAGAACTCAAGAAAACGTG...

CDS

2 records

下载 CDS FASTA

LOC131017564
ATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGACGAAGAAGAGGAAGAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTGTCAATATTGCCGGTGAAATCACTGTTGAGATTTAGGTGCGTTTCGAAAACATGGCGGTCTTTAATAGGCAGCAAACGCTTCATCAAAGCCCATCA...

LOC131017564
ATGGCGATATTGCTGCCATATCAAAATTTGGGATGCTGTAATGGGCTGTTCTGCGTTCTCAAGAACTCAAGAAAACGTGCAGAAATTTTTCAAGAAATTTACTTGTGGAACCCATCGACTCGGACCTCCAAGAAACTGCCAGTAATTTCCAGTCCCGGCTATGTTCGTAATTACGGATTCGGTTGGGTTGAATCGAGTGATGAGTACAAGGTGTTTGTGCTTTTGTTTCATTATGATTATTACCGGGGGATTGGTAACTG...

Protein

2 records

下载 Protein FASTA

XP_057802348.1
MKNEKKVQQFLSRSARIGRRRRRIRRRRRRGRRGRRRRRNQQSLHLPEEIIEEILSILPVKSLLRFRCVSKTWRSLIGSKRFIKAHHQNSIKNPSFPHQRLITVTTKCDRLEECSLQSLLSEAPISRYSLDDAMAILLPYQNLGCCNGLFCVLKNSRKRAEIFQEIYLWNPSTRTSKKLPVISSPGYVRNYGFGWVESSDEYKVFVLLFHYDYYRGIGNWVGKVYSSKTKSWKTIELSGYLRVSWGRGVFAGGKLYWKNY...

XP_057802349.1
MAILLPYQNLGCCNGLFCVLKNSRKRAEIFQEIYLWNPSTRTSKKLPVISSPGYVRNYGFGWVESSDEYKVFVLLFHYDYYRGIGNWVGKVYSSKTKSWKTIELSGYLRVSWGRGVFAGGKLYWKNYGDKEGITFWDLKSEVFGGIELPFDREGYGIVGVLGGLLCVLCFNDEIRGYRVWVMKESWEKVVTLSHLLELLQPPLVKGLNGDILVNCGSTVVVYDCRDNVFCNLEYRSFSLSCHVCVESLVSPKDL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器