当前解析结果
SmilChr03G001049| 统一新 Gene ID | SmilChr03G001049 |
|---|---|
| 名称 | SmilChr03G001049 |
| 描述 | putative laccase-9 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12216912 - 12219251 / - |
| NCBI Gene ID | LOC131017539 |
|---|---|
| GeneID | 131017539 |
| locus_tag | - |
| NCBI Name | LOC131017539 |
| 原始查询 | SmilChr03G001049 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative laccase-9 |
| 产物 | putative laccase-9 |
| Arabidopsis | AT5G09360 (LAC14)laccase 14 [Source:NCBI gene (formerly Entrezgene);Acc:830795] identity=45; qcov=0.977; evalue=0; confidence=medium |
| Rice | Os02g0749700 (OsLAC10)- identity=48.4; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity) |
| KEGG | - |
| Pfam | PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017539 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057802309.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802309.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802309.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802309.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802309.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12217116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:12217185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C41,C84 |
Chr3:12217186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C31 |
Chr3:12217234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A14,B58,C41,C8 |
Chr3:12217401 |
C |
CG |
1bp_insertion | frameshift_variant | 13 | A1,A14,B132,B27,B3,B47,B51,B56,C17,C41,C56,D11,D7 |
Chr3:12217434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C14,C38,C59,C6 |
Chr3:12217800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr3:12217950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B25,C13,C32,C72 |
Chr3:12217958 |
A |
AGG |
2bp_insertion | frameshift_variant | 2 | B33,B41 |
Chr3:12217958 |
A |
AGG |
2bp_insertion | CDS_variant | 2 | B33,B41 |
Chr3:12217979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B92,D5 |
Chr3:12218001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802309.1PF07732
Cu-oxidase_3 29-143 aa
PF00394
Cu-oxidase 156-303 aa
PF07731
Cu-oxidase_2 408-543 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802309.1 |
Pfam | PF07732 |
Cu-oxidase_3 | Domain | 29 | 143 | 1.4e-39 | 135.6 | Multicopper oxidase |
XP_057802309.1 |
Pfam | PF00394 |
Cu-oxidase | Domain | 156 | 303 | 7.5e-37 | 127.6 | Multicopper oxidase |
XP_057802309.1 |
Pfam | PF07731 |
Cu-oxidase_2 | Domain | 408 | 543 | 2.7e-41 | 141.3 | Multicopper oxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。