Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001074`

染色体: Chr03 坐标: 12438164-12443107 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001074`
名称	SmilChr03G001074
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12438164 - 12443107 / `+`

ID 对照

NCBI Gene ID	`LOC131017518`
GeneID	`131017518`
locus_tag	`-`
NCBI Name	`LOC131017518`
原始查询	`SmilChr03G001074`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.5; qcov=1.09; evalue=1.06e-86; confidence=low
Rice	`Os07g0186500` - identity=30.6; qcov=0.908; evalue=3.98e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017518

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057802271.1`
2	Cytosol	细胞质基质	0.20000	`XP_057802271.1`
3	Nucleus	细胞核	0.00000	`XP_057802271.1`
4	Chromosome	染色体	0.00000	`XP_057802271.1`
5	Centromere	着丝粒	0.00000	`XP_057802271.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12439616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:12439645`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B104
`Chr3:12439645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:12439663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:12439700`	`TCC`	`T`	2bp_deletion	frameshift_variant	55	A19,A8,A9,B102,B111,B115,B126,B13,B139,B19,B25,B28,B30,B31,B47,B52,B59,B61,B63,B66,B70,B71,B72,B86,B88,B91,B94,B97,B98,C1,C11,C17,C25,C26,C30,C31,C35,C36,C40,C42,C50,C55,C56,C57,C58,C62,C69,C70,C71,C79,C87,C9,D2,D3,D8
`Chr3:12439705`	`T`	`TTA`	2bp_insertion	frameshift_variant	46	A8,A9,B102,B111,B115,B13,B139,B19,B25,B28,B31,B47,B52,B59,B61,B63,B66,B70,B71,B88,B91,B94,B97,B98,C1,C11,C17,C25,C26,C30,C31,C35,C40,C50,C55,C56,C57,C58,C62,C69,C70,C71,C79,C87,D3,D8
`Chr3:12439715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:12439780`	`G`	`GA`	1bp_insertion	frameshift_variant	5	A11,B137,B34,B6,C3
`Chr3:12439780`	`G`	`GA`	1bp_insertion	CDS_variant	5	A11,B137,B34,B6,C3
`Chr3:12439789`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:12439791`	`T`	`TAA`	2bp_insertion	frameshift_variant	1	B34
`Chr3:12439791`	`T`	`TAA`	2bp_insertion	CDS_variant	1	B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802271.1

843 aa

422

843

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-479 aa PF23598 LRR_14 536-823 aa

XP_057802272.1

843 aa

422

843

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-479 aa PF23598 LRR_14 536-823 aa

XP_057802273.1

784 aa

392

784

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 100-264 aa PF23559 WHD_DRP 349-420 aa PF23598 LRR_14 477-764 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802271.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	3.2e-40	138.3	NB-ARC domain
`XP_057802271.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	479	1.1e-22	80.6	Disease resistance protein Winged helix domain
`XP_057802271.1`	Pfam	`PF23598`	LRR_14	Repeat	536	823	1.1e-21	77.7	Leucine-rich repeat region
`XP_057802272.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	3.2e-40	138.3	NB-ARC domain
`XP_057802272.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	479	1.1e-22	80.6	Disease resistance protein Winged helix domain
`XP_057802272.1`	Pfam	`PF23598`	LRR_14	Repeat	536	823	1.1e-21	77.7	Leucine-rich repeat region
`XP_057802273.1`	Pfam	`PF00931`	NB-ARC	Domain	100	264	2.8e-40	138.4	NB-ARC domain
`XP_057802273.1`	Pfam	`PF23559`	WHD_DRP	Domain	349	420	9.7e-23	80.7	Disease resistance protein Winged helix domain
`XP_057802273.1`	Pfam	`PF23598`	LRR_14	Repeat	477	764	1.1e-21	77.8	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946289.1
TTTTTTTTTTTTTGAGAAGATGTTGGGCTTTGGTTAACAAAACAAAACGAAGTGTATCTAAAACGTATTATAACCAAATAAAAAAAGAAAAAAAAAATATCTTCGTTCAGTGAAAATATTTTCAACTGGAGAATCTGAGCTGATTGAGCTTTGATGTGCTCAACACCTAAAGGAGAAATTCTTGTTCTTCTATTGAGGGAAAAACATGGTGAGAAGCATCCATGAGAGGCCAGCAAACGGGATTGGTGCTGGTTTGGGAG...

XM_057946290.1
TTTGAGAAGATGTTGGGCTTTGGTTAACAAAACAAAACGAAGTGTATCTAAAACGTATTATAACCAAATAAAAAAAGAAAAAAAAAATATCTTCGTTCAGTGAAAATATTTTCAACTGGAGAATCTGAGCTGATTGAGCTTTGATGTGCTCAACACCTAAAGGAGAAATTCTTGTTCTTCTATTGAGGGAAAAACATGGTGAGAAGCATCCATGAGAGGCCAGCAAACGGGATTGGTGCTGGTTTGGGAGCGAATGGTTC...

CDS

3 records

下载 CDS FASTA

LOC131017518
ATGGCTTATTCTACTCTTGTTTCCCTTGAGCGCACCATTGATCAATTCCTCAATCATAATCAATTTTCCATTTCTCCTCATGAAAAAAAACATATTTTATCTCTAGATAAATATGTCCTTTCACTCCGAGCTTTTCTTGAGGATTTTCCGGAGAAAGCCAAGAGTTTGGAAGCAAGAATGAGTAATGTAGCAATGGAGGCGGAAGATGTTATTGAATTGTATATGACGGAAAAAATCCACTTCAATATTCGATATACCCA...

Protein

3 records

下载 Protein FASTA

XP_057802271.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHILSLDKYVLSLRAFLEDFPEKAKSLEARMSNVAMEAEDVIELYMTEKIHFNIRYTHWVAELRRIKFIFQLRRVRDQMDSIAGEVVQIKNSIIIKDAQLDGYVGASSSSSQGAEAGKTNMVGLNVDLMEIMGRLCGDSRELQILPITGMGGIGKTTLARNAYDHPFSMEHFQIRVWVTISQDYSEQRILSNLLDSLKEFDRERGNISMAVKVYQILVGRRFLIVIDDIWS...

XP_057802272.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHILSLDKYVLSLRAFLEDFPEKAKSLEARMSNVAMEAEDVIELYMTEKIHFNIRYTHWVAELRRIKFIFQLRRVRDQMDSIAGEVVQIKNSIIIKDAQLDGYVGASSSSSQGAEAGKTNMVGLNVDLMEIMGRLCGDSRELQILPITGMGGIGKTTLARNAYDHPFSMEHFQIRVWVTISQDYSEQRILSNLLDSLKEFDRERGNISMAVKVYQILVGRRFLIVIDDIWS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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