Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001083`

染色体: Chr03 坐标: 12541139-12542739 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001083`
名称	SmilChr03G001083
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12541139 - 12542739 / `+`

ID 对照

NCBI Gene ID	`LOC131017569`
GeneID	`131017569`
locus_tag	`-`
NCBI Name	`LOC131017569`
原始查询	`SmilChr03G001083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.5; qcov=1.13; evalue=2.51e-29; confidence=low
Rice	`Os08g0382800` (OsFbox443) - identity=31.6; qcov=0.544; evalue=1.92e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017569

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802353.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802353.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802353.1`
4	Chromosome	染色体	0.00000	`XP_057802353.1`
5	Centromere	着丝粒	0.00000	`XP_057802353.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12541569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B109,B22
`Chr3:12541588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B22
`Chr3:12541617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B99,C58,C61,C63
`Chr3:12541626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B61,B87
`Chr3:12541637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B5,B57
`Chr3:12541656`	`TA`	`T`	1bp_deletion	frameshift_variant	3	A16,D4,D6
`Chr3:12541656`	`TA`	`T`	1bp_deletion	CDS_variant	3	A16,D4,D6
`Chr3:12541671`	`TC`	`T`	1bp_deletion	frameshift_variant	1	D8
`Chr3:12541671`	`TC`	`T`	1bp_deletion	CDS_variant	1	D8
`Chr3:12541718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B44,C47,C53,C86
`Chr3:12541751`	`C`	`T`	EMS_canonical_SNV	stop_gained	17	A18,B127,B129,B19,B29,B30,B34,B40,B72,B95,C32,C55,C58,C65,C68,C80,D8
`Chr3:12541850`	`T`	`TC`	1bp_insertion	frameshift_variant	22	A21,B104,B129,B133,B18,B3,B39,B52,B64,B69,B80,C12,C23,C32,C37,C38,C47,C50,C54,C56,C62,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802353.1

379 aa

190

379

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 34-72 aa PF12937 F-box-like 35-67 aa PF08268 FBA_3 131-312 aa PF03478 Beta-prop_KIB1-4 133-317 aa PF07734 FBA_1 134-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802353.1`	Pfam	`PF00646`	F-box	Domain	34	72	2.3e-14	53.3	F-box domain
`XP_057802353.1`	Pfam	`PF12937`	F-box-like	Domain	35	67	2.5e-10	40.7	F-box-like
`XP_057802353.1`	Pfam	`PF08268`	FBA_3	Repeat	131	312	9.6e-16	58.4	F-box associated beta propeller domain
`XP_057802353.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	133	317	6.7e-09	36.3	KIB1-4 beta-propeller
`XP_057802353.1`	Pfam	`PF07734`	FBA_1	Repeat	134	322	1.1e-19	71.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946370.1
TCTCTGATAAAACTATTTCTCTAGTAAAAATCTTCACCGCAGTTTATCAATTTTAGGGTTTATTTTGGTTCCACGCCTTTGAATCTCATGCTTAACCCCTTTTTTAAGGGGCAAACTTAACCGCGCCGCCGCTTCTCCATGTCACACCGTTGTTCAGAGCCGCGTAGCCCCTGACCCGTACCATCATCGCCCTTGATTTTGGTCTTGCTAAGATGAAGAATGCGGAAAATAGAATAGGCAGAAGAAGAAGAAGAAAAAGA...

CDS

1 records

下载 CDS FASTA

LOC131017569
ATGAAGAATGCGGAAAATAGAATAGGCAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAAAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTGTCAAGATTGCCGGTGAAATCACTGTTGAGATTGAGGTGCGTTTCGAAAACATGGCGATCTTTAATAGGAAGCAAATGCTTCATCAAAGCCCATCATCAAAATTCAATAAAAAATCCATGTTTCCC...

Protein

1 records

下载 Protein FASTA

XP_057802353.1
MKNAENRIGRRRRRKRRRRRRKRGRRRRRNQQSLHLPEEIIEEILSRLPVKSLLRLRCVSKTWRSLIGSKCFIKAHHQNSIKNPCFPHQRLIRVTTKYDRLEECSLQSLLRKRLISRYSLDNLEITTLLPLQSWGCCNGLFCVIGLSKWPERVYLWNPSTRTSKKLPEISSPGYVRNYGFGWVESSDEYKVFVLLVDYDYYQGIGNSSVGKVYSSKTKSWKTIELCDDLDYCWRGGVFAGGKLYWRNYGDKEYIIFWDLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器