当前解析结果
SmilChr03G001090| 统一新 Gene ID | SmilChr03G001090 |
|---|---|
| 名称 | SmilChr03G001090 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12607977 - 12609094 / + |
| NCBI Gene ID | LOC131017578 |
|---|---|
| GeneID | 131017578 |
| locus_tag | - |
| NCBI Name | LOC131017578 |
| 原始查询 | SmilChr03G001090 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=27; qcov=1.07; evalue=1.12e-27; confidence=low |
| Rice | Os09g0447600- identity=29.4; qcov=0.784; evalue=1.07e-16; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017578 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802365.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802365.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802365.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802365.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802365.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12607987 |
G |
GGA |
2bp_insertion | frameshift_variant | 2 | C21,C4 |
Chr3:12607987 |
G |
GGA |
2bp_insertion | CDS_variant | 2 | C21,C4 |
Chr3:12608060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:12608195 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B139,B35,B78,C35 |
Chr3:12608195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B139,B35,B78,C35 |
Chr3:12608279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C86 |
Chr3:12608284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C86 |
Chr3:12608304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C86 |
Chr3:12608306 |
AT |
A |
1bp_deletion | frameshift_variant | 18 | A16,A21,A22,A5,B104,B14,B15,B35,B47,B82,C31,C34,C45,C49,C55,C57,C63,D2 |
Chr3:12608309 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A16,A21,A22,A5,B104,B14,B15,B35,B47,B82,C31,C34,C45,C49,C55,C57,C63,D2 |
Chr3:12608392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B30,C80,C82 |
Chr3:12608394 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B104,B15,B35,C31,C34,C45,C49,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802365.1PF12937
F-box-like 11-45 aa
PF00646
F-box 11-50 aa
PF08268
FBA_3 94-290 aa
PF07734
FBA_1 94-299 aa
PF24750
b-prop_At3g26010-like 96-310 aa
PF03478
Beta-prop_KIB1-4 98-294 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802365.1 |
Pfam | PF12937 |
F-box-like | Domain | 11 | 45 | 3.2e-08 | 33.9 | F-box-like |
XP_057802365.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 50 | 2.2e-11 | 43.9 | F-box domain |
XP_057802365.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 94 | 290 | 1.2e-16 | 61.3 | F-box associated beta propeller domain |
XP_057802365.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 94 | 299 | 7.7e-20 | 71.8 | F-box associated beta propeller domain |
XP_057802365.1 |
Pfam | PF24750 |
b-prop_At3g26010-like | Repeat | 96 | 310 | 1.5e-06 | 28.3 | F-box protein At3g26010-like, beta-propeller |
XP_057802365.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 98 | 294 | 6.9e-08 | 33.0 | KIB1-4 beta-propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。