当前解析结果
SmilChr03G001101| 统一新 Gene ID | SmilChr03G001101 |
|---|---|
| 名称 | SmilChr03G001101 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12675247 - 12676599 / + |
| NCBI Gene ID | LOC131017577 |
|---|---|
| GeneID | 131017577 |
| locus_tag | - |
| NCBI Name | LOC131017577 |
| 原始查询 | SmilChr03G001101 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=25.9; qcov=1.06; evalue=4.84e-25; confidence=low |
| Rice | Os09g0447600- identity=29.4; qcov=0.734; evalue=7.69e-14; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017577 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802363.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802363.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802363.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802363.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802363.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12675510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,C22,C54,C57 |
Chr3:12675538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr3:12675561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C22 |
Chr3:12675649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C53 |
Chr3:12675669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:12675719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:12675842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:12675972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B139,C13,C70 |
Chr3:12675980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C44 |
Chr3:12676062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B121,C15,C69 |
Chr3:12676068 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | C15,C69 |
Chr3:12676068 |
AT |
A |
1bp_deletion | CDS_variant | 2 | C15,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802363.1PF00646
F-box 18-56 aa
PF03478
Beta-prop_KIB1-4 103-295 aa
PF08268
FBA_3 104-290 aa
PF07734
FBA_1 106-300 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802363.1 |
Pfam | PF00646 |
F-box | Domain | 18 | 56 | 4.2e-09 | 36.7 | F-box domain |
XP_057802363.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 103 | 295 | 2.1e-07 | 31.5 | KIB1-4 beta-propeller |
XP_057802363.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 104 | 290 | 5e-15 | 56.0 | F-box associated beta propeller domain |
XP_057802363.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 106 | 300 | 4.6e-18 | 66.0 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。