Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001107`

染色体: Chr03 坐标: 12757827-12758819 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001107`
名称	SmilChr03G001107
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12757827 - 12758819 / `+`

ID 对照

NCBI Gene ID	`LOC131018354`
GeneID	`131018354`
locus_tag	`-`
NCBI Name	`LOC131018354`
原始查询	`SmilChr03G001107`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=28.7; qcov=1.03; evalue=6.82e-20; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=26; qcov=0.733; evalue=2.89e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131018354

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803066.1`
2	Cytoplasm	细胞质	1.00000	`XP_057803066.1`
3	Cytosol	细胞质基质	0.40000	`XP_057803066.1`
4	Chromosome	染色体	0.00000	`XP_057803066.1`
5	Centromere	着丝粒	0.00000	`XP_057803066.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12757878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:12757925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:12757956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B46,B93
`Chr3:12758099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:12758117`	`G`	`GAT`	2bp_insertion	frameshift_variant	17	B102,B119,B124,B132,B136,B3,B38,B39,B47,B53,B56,B61,B96,C14,C41,C56,D7
`Chr3:12758139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:12758186`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:12758237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,B79,C87
`Chr3:12758284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C55,D8
`Chr3:12758321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,C31,C34,C63,C67
`Chr3:12758328`	`TGG`	`T`	2bp_deletion	frameshift_variant	48	A13,A16,A21,A4,B101,B102,B103,B105,B106,B121,B139,B14,B29,B30,B34,B35,B36,B38,B39,B44,B52,B61,B64,B72,B81,B86,B87,B91,B94,C11,C13,C21,C24,C29,C36,C37,C4,C42,C49,C54,C55,C56,C57,C60,C65,C69,C70,C80
`Chr3:12758341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803066.1

330 aa

165

330

F-box

FBA_3

FBA_1

PF00646 F-box 28-58 aa PF08268 FBA_3 119-302 aa PF07734 FBA_1 120-316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803066.1`	Pfam	`PF00646`	F-box	Domain	28	58	5.1e-07	30.1	F-box domain
`XP_057803066.1`	Pfam	`PF08268`	FBA_3	Repeat	119	302	2.8e-13	50.3	F-box associated beta propeller domain
`XP_057803066.1`	Pfam	`PF07734`	FBA_1	Repeat	120	316	2.9e-19	69.9	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947083.1
ATGGATAATACTGAGTTTCTGAACAAGAAAACTGACAGCTCCGTACAATCTCTCCATCTCCATCAAGAAATCATCGAAGAAGAAATATTACCAAGATTGCCGGTGAAATCACTCTTGAAATTCAGGTGCGTTTCGAAATCATGGCGCTCTATGATAGGCAGCAAACGTTTCATCAAAACTCACCTCAAGAATTCAACAAACAACCAAAATTACGCTCAATGGAAAGTAATCTTCAACTCTAGAGAACATGGAATGATCCA...

CDS

1 records

下载 CDS FASTA

LOC131018354
ATGGATAATACTGAGTTTCTGAACAAGAAAACTGACAGCTCCGTACAATCTCTCCATCTCCATCAAGAAATCATCGAAGAAGAAATATTACCAAGATTGCCGGTGAAATCACTCTTGAAATTCAGGTGCGTTTCGAAATCATGGCGCTCTATGATAGGCAGCAAACGTTTCATCAAAACTCACCTCAAGAATTCAACAAACAACCAAAATTACGCTCAATGGAAAGTAATCTTCAACTCTAGAGAACATGGAATGATCCA...

Protein

1 records

下载 Protein FASTA

XP_057803066.1
MDNTEFLNKKTDSSVQSLHLHQEIIEEEILPRLPVKSLLKFRCVSKSWRSMIGSKRFIKTHLKNSTNNQNYAQWKVIFNSREHGMIQCSMRSYLDEEGLNLSPIDNPPDDCLMITTDLVVGCCNGLVCVVNADEFCFFVLNAATRISIELPETDLIHHLQFTKLGFGWEEESGAYKVFVGVFYEDDDERLGKVYSSETNSWKTVEHGSLDWHCSLGKFARGRLHWVAVNGGHTYIESFDLKREVFETMELPCKLPKGDGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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