当前解析结果
SmilChr03G001109| 统一新 Gene ID | SmilChr03G001109 |
|---|---|
| 名称 | SmilChr03G001109 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12790036 - 12791228 / + |
| NCBI Gene ID | LOC131018355 |
|---|---|
| GeneID | 131018355 |
| locus_tag | - |
| NCBI Name | LOC131018355 |
| 原始查询 | SmilChr03G001109 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=31.2; qcov=0.926; evalue=2.01e-20; confidence=low |
| Rice | Os04g0194000 (OsFbox184)- identity=25.5; qcov=0.855; evalue=7.44e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018355 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803068.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057803068.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803068.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803068.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803068.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12790187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr3:12790332 |
GC |
G |
1bp_deletion | frameshift_variant | 28 | A18,A6,B1,B114,B117,B123,B13,B137,B24,B34,B48,B52,B66,B70,B80,B89,B93,C15,C16,C33,C41,C61,C73,C81,C82,D1,D4,D9 |
Chr3:12790348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr3:12790360 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B89,C61 |
Chr3:12790360 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B89,C61 |
Chr3:12790384 |
A |
ATG |
2bp_insertion | frameshift_variant | 2 | A14,C74 |
Chr3:12790384 |
A |
ATG |
2bp_insertion | CDS_variant | 2 | A14,C74 |
Chr3:12790399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B113,B45 |
Chr3:12790520 |
G |
A |
EMS_canonical_SNV | stop_gained | 29 | A14,A19,A24,A8,B1,B108,B109,B11,B126,B138,B17,B23,B37,B60,B68,B82,B88,B90,B92,C27,C31,C36,C51,C52,C73,C74,C77,C9,D5 |
Chr3:12790578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C54 |
Chr3:12790602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr3:12790605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C55,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803068.1PF00646
F-box 25-55 aa
PF08268
FBA_3 111-296 aa
PF07734
FBA_1 111-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803068.1 |
Pfam | PF00646 |
F-box | Domain | 25 | 55 | 1.4e-07 | 31.8 | F-box domain |
XP_057803068.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 111 | 296 | 1.3e-15 | 58.0 | F-box associated beta propeller domain |
XP_057803068.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 111 | 310 | 4.8e-20 | 72.5 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。