Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001111`

染色体: Chr03 坐标: 12809327-12818427 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001111`
名称	SmilChr03G001111
描述	transcription initiation factor TFIID subunit 4b-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12809327 - 12818427 / `-`

ID 对照

NCBI Gene ID	`LOC131017491`
GeneID	`131017491`
locus_tag	`-`
NCBI Name	`LOC131017491`
原始查询	`SmilChr03G001111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor TFIID subunit 4b-like
产物	transcription initiation factor TFIID subunit 4b-like
Arabidopsis	`AT5G43130` (TAF4) TBP-associated factor 4 [Source:NCBI gene (formerly Entrezgene);Acc:834330] identity=43.6; qcov=1; evalue=0; confidence=medium
Rice	`Os03g0441000` - identity=36.9; qcov=0.833; evalue=3.68e-109; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005669 (transcription factor TFIID complex); GO:0006367 (transcription initiation at RNA polymerase II promoter); GO:0016251 (RNA polymerase II general transcription initiation factor activity); GO:0046982 (protein heterodimerization activity)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF05236 (TAF4); PF12174 (RST)
InterPro	-
eggNOG	-
NR	GeneID:131017491

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802221.1`
2	Chromosome	染色体	0.00000	`XP_057802221.1`
3	Centromere	着丝粒	0.00000	`XP_057802221.1`
4	Chromatin	染色质	0.00000	`XP_057802221.1`
5	Telomere	端粒	0.00000	`XP_057802221.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12809649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B34
`Chr3:12809748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:12810448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B8,B80,C42
`Chr3:12810598`	`GC`	`G`	1bp_deletion	frameshift_variant	5	B17,B40,B49,C4,C50
`Chr3:12810598`	`GC`	`G`	1bp_deletion	CDS_variant	5	B17,B40,B49,C4,C50
`Chr3:12810623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,C9
`Chr3:12810738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D3,D6
`Chr3:12810747`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B115,B53,C42
`Chr3:12810747`	`TA`	`T`	1bp_deletion	CDS_variant	3	B115,B53,C42
`Chr3:12810763`	`TG`	`T`	1bp_deletion	frameshift_variant	4	B110,B16,B88,C67
`Chr3:12810763`	`TG`	`T`	1bp_deletion	CDS_variant	4	B110,B16,B88,C67
`Chr3:12810928`	`G`	`GA`	1bp_insertion	frameshift_variant	12	A3,B108,B126,B22,B34,B36,B57,B83,B84,B95,C28,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802221.1

979 aa

490

979

RST

TAF4

PF12174 RST 256-318 aa PF05236 TAF4 674-968 aa

XP_057802222.1

979 aa

490

979

RST

TAF4

PF12174 RST 256-318 aa PF05236 TAF4 674-968 aa

XP_057802223.1

979 aa

490

979

RST

TAF4

PF12174 RST 256-318 aa PF05236 TAF4 674-968 aa

XP_057802224.1

978 aa

489

978

RST

TAF4

PF12174 RST 255-317 aa PF05236 TAF4 673-967 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802221.1`	Pfam	`PF12174`	RST	Domain	256	318	3.7e-22	78.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057802221.1`	Pfam	`PF05236`	TAF4	Family	674	968	1.4e-75	255.2	Transcription initiation factor TFIID component TAF4 family
`XP_057802222.1`	Pfam	`PF12174`	RST	Domain	256	318	3.7e-22	78.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057802222.1`	Pfam	`PF05236`	TAF4	Family	674	968	1.4e-75	255.2	Transcription initiation factor TFIID component TAF4 family
`XP_057802223.1`	Pfam	`PF12174`	RST	Domain	256	318	3.7e-22	78.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057802223.1`	Pfam	`PF05236`	TAF4	Family	674	968	1.4e-75	255.2	Transcription initiation factor TFIID component TAF4 family
`XP_057802224.1`	Pfam	`PF12174`	RST	Domain	255	317	3.6e-22	78.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057802224.1`	Pfam	`PF05236`	TAF4	Family	673	967	1.4e-75	255.2	Transcription initiation factor TFIID component TAF4 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057946238.1
AAAATGCACTATTCAATCGGTATTACAATACCTTTTCCAAAATTAAACACAAGAATCAATTTGACCCAATTACCCCCTTCGTTTGTCTTCAAATTTCAATAGGATAGAAAAAAATTCGCAGCCCTCCGAGATAGAAGAGTCGTCGACAATACTGTGGTGGAGCCGGGATTTTTTGGATTTCTCAATCAAAATATGCATCTCCTCTTATGCTGATATTGAATCAAACTCTCCGATTTGGGAATAAAAGTTTTATAGAAGGG...

XM_057946239.1
ATCGGTATTACAATACCTTTTCCAAAATTAAACACAAGAATCAATTTGACCCAATTACCCCCTTCGTTTGTCTTCAAATTTCAATAGGATAGAAAAAAATTCGCAGCCCTCCGAGATAGAAGAGTCGTCGACAATACTGTGGTGGAGCCGGGATTTTTTGGATTTCTCAATCAAAATATGCATCTCCTCTTATGCTGATATTGAATCAAACTCTCCGATTTGGGAATAAAAGCTTGGACCCAGATATGATTTTTGTTGGG...

CDS

4 records

下载 CDS FASTA

LOC131017491
ATGGACCCAAACATCATGAAATTCCTTGAAGAAGACGAGGATGAAACTATGCATTCGGGCGCAGACGTGGAGGCCTTCACAGCAGAATTGAACAGAGACATTGAAGGGAATAATTCGATACAGGAGGATTCCTTTGATTCCAATGCCGCCTTGTCTCAAGGAAGCAGTCATATGACAGGTCAGTTTCTTCCACAGTGGCACACGTCCCATAATGATGGGATTGCTAATTTCCAAAGTGGGCAAGATATTACGACCGTGGG...

LOC131017491
ATGGACCCAAACATCATGAAATTCCTTGAAGAAGACGAGGATGAAACTATGCATTCGGGCGCAGACGTGGAGGCCTTCACAGCAGAATTGAACAGAGACATTGAAGGGAATAATTCGATACAGGAGGATTCCTTTGATTCCAATGCCGCAGCCTTGTCTCAAGGAAGCAGTCATATGACAGGTCAGTTTCTTCCACAGTGGCACACGTCCCATAATGATGGGATTGCTAATTTCCAAAGTGGGCAAGATATTACGACCGT...

Protein

4 records

下载 Protein FASTA

XP_057802221.1
MDPNIMKFLEEDEDETMHSGADVEAFTAELNRDIEGNNSIQEDSFDSNAAALSQGSSHMTGQFLPQWHTSHNDGIANFQSGQDITTVGEKDQHSSELELHRHDSDSQNRKEDDSSSHEPNPNQQDDQNTFPLPQTVSGQPSGEHPITAQVLDHEAKPDKELQMNKLQNISQHPSMAVGSNDQQPLSMEFSDQQILPAGKGNSQTSMGVNNDQVMPPLNQQTTGMPITSQQAITSGMSNPQTMTSSSQQSVTALKLNKQVP...

XP_057802222.1
MDPNIMKFLEEDEDETMHSGADVEAFTAELNRDIEGNNSIQEDSFDSNAAALSQGSSHMTGQFLPQWHTSHNDGIANFQSGQDITTVGEKDQHSSELELHRHDSDSQNRKEDDSSSHEPNPNQQDDQNTFPLPQTVSGQPSGEHPITAQVLDHEAKPDKELQMNKLQNISQHPSMAVGSNDQQPLSMEFSDQQILPAGKGNSQTSMGVNNDQVMPPLNQQTTGMPITSQQAITSGMSNPQTMTSSSQQSVTALKLNKQVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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