当前解析结果
SmilChr03G001121| 统一新 Gene ID | SmilChr03G001121 |
|---|---|
| 名称 | SmilChr03G001121 |
| 描述 | uncharacterized SmilChr03G001121 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12913771 - 12917847 / - |
| NCBI Gene ID | LOC131018358 |
|---|---|
| GeneID | 131018358 |
| locus_tag | - |
| NCBI Name | LOC131018358 |
| 原始查询 | SmilChr03G001121 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=28.6; qcov=0.412; evalue=3.7e-60; confidence=low |
| Rice | Os06g0484800- identity=30.1; qcov=0.627; evalue=1.14e-103; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803071.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803071.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057803071.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803071.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803071.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12913805 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | A4,B29,B35,C48 |
Chr3:12913805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B29,B35,C48 |
Chr3:12913809 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | A4,B29 |
Chr3:12913809 |
T |
TA |
1bp_insertion | CDS_variant | 2 | A4,B29 |
Chr3:12913811 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | A4,B29 |
Chr3:12913811 |
G |
GA |
1bp_insertion | CDS_variant | 2 | A4,B29 |
Chr3:12913818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B60,C75,C86 |
Chr3:12913821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr3:12913826 |
C |
T |
EMS_canonical_SNV | stop_gained | 60 | A1,A11,A18,A20,A22,A25,A5,B102,B109,B110,B111,B113,B115,B12,B120,B122,B126,B129,B134,B16,B20,B27,B4,B44,B48,B60,B61,B66,B74,B78,B82,B89,B95,B98,B99,C13,C14,C15,C18,C19,C20,C3,C36,C39,C48,C50,C54,C57,C60,C63,C64,C66,C67,C71,C72,C75,C76,C79,D7,D9 |
Chr3:12913843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,C38,C8 |
Chr3:12913859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B50,D7 |
Chr3:12913866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803071.1PF00078
RVT_1 493-743 aa
PF13966
zf-RVT 1032-1104 aa
PF13456
RVT_3 1211-1330 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803071.1 |
Pfam | PF00078 |
RVT_1 | Domain | 493 | 743 | 9.6e-29 | 101.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803071.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1032 | 1104 | 2e-10 | 41.9 | zinc-binding in reverse transcriptase |
XP_057803071.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1211 | 1330 | 2.2e-16 | 60.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。