当前解析结果
SmilChr03G001122| 统一新 Gene ID | SmilChr03G001122 |
|---|---|
| 名称 | SmilChr03G001122 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12919689 - 12925466 / + |
| NCBI Gene ID | LOC131017570 |
|---|---|
| GeneID | 131017570 |
| locus_tag | - |
| NCBI Name | LOC131017570 |
| 原始查询 | SmilChr03G001122 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=31.9; qcov=0.973; evalue=2.12e-34; confidence=low |
| Rice | Os09g0449600 (OsFbox490)- identity=26.6; qcov=0.806; evalue=1.65e-16; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017570 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802355.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057802355.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802355.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802355.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802355.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12919879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr3:12919956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B48 |
Chr3:12920056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B105 |
Chr3:12920105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B94 |
Chr3:12920116 |
GC |
G |
1bp_deletion | frameshift_variant | 17 | A22,B101,B102,B135,B30,B35,B60,B80,B84,B85,B89,C17,C38,C44,C49,C70,C75 |
Chr3:12920122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B122,B67,C4,C46 |
Chr3:12920130 |
G |
GC |
1bp_insertion | frameshift_variant | 19 | A11,A5,B1,B136,B14,B24,B42,B57,B63,B87,B88,B93,B94,C38,C51,C81,C9,D4,D8 |
Chr3:12920146 |
T |
TC |
1bp_insertion | frameshift_variant | 23 | A11,A22,B101,B102,B135,B22,B30,B35,B60,B79,B80,B84,B85,B89,B93,C17,C36,C38,C44,C49,C70,C75,D4 |
Chr3:12920299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:12920338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B111,B48,C45,D5 |
Chr3:12920405 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B2 |
Chr3:12920405 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802355.1PF00646
F-box 21-60 aa
PF12937
F-box-like 22-57 aa
PF07734
FBA_1 107-368 aa
PF08268
FBA_3 116-352 aa
XP_057802356.1PF00646
F-box 21-60 aa
PF12937
F-box-like 22-57 aa
PF07734
FBA_1 107-368 aa
PF08268
FBA_3 116-352 aa
XP_057802357.1PF00646
F-box 21-60 aa
PF12937
F-box-like 22-57 aa
PF07734
FBA_1 107-368 aa
PF08268
FBA_3 116-352 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802355.1 |
Pfam | PF00646 |
F-box | Domain | 21 | 60 | 1.1e-13 | 51.2 | F-box domain |
XP_057802355.1 |
Pfam | PF12937 |
F-box-like | Domain | 22 | 57 | 3.8e-08 | 33.7 | F-box-like |
XP_057802355.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 107 | 368 | 2.6e-20 | 73.4 | F-box associated beta propeller domain |
XP_057802355.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 116 | 352 | 2.3e-20 | 73.6 | F-box associated beta propeller domain |
XP_057802356.1 |
Pfam | PF00646 |
F-box | Domain | 21 | 60 | 1.1e-13 | 51.2 | F-box domain |
XP_057802356.1 |
Pfam | PF12937 |
F-box-like | Domain | 22 | 57 | 3.8e-08 | 33.7 | F-box-like |
XP_057802356.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 107 | 368 | 2.6e-20 | 73.4 | F-box associated beta propeller domain |
XP_057802356.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 116 | 352 | 2.3e-20 | 73.6 | F-box associated beta propeller domain |
XP_057802357.1 |
Pfam | PF00646 |
F-box | Domain | 21 | 60 | 1.1e-13 | 51.2 | F-box domain |
XP_057802357.1 |
Pfam | PF12937 |
F-box-like | Domain | 22 | 57 | 3.8e-08 | 33.7 | F-box-like |
XP_057802357.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 107 | 368 | 2.6e-20 | 73.4 | F-box associated beta propeller domain |
XP_057802357.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 116 | 352 | 2.3e-20 | 73.6 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。