当前解析结果
SmilChr03G001124| 统一新 Gene ID | SmilChr03G001124 |
|---|---|
| 名称 | SmilChr03G001124 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12934568 - 12937249 / + |
| NCBI Gene ID | LOC131018360 |
|---|---|
| GeneID | 131018360 |
| locus_tag | - |
| NCBI Name | LOC131018360 |
| 原始查询 | SmilChr03G001124 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=35.5; qcov=0.539; evalue=8.65e-77; confidence=medium |
| Rice | Os07g0186500- identity=29.7; qcov=0.731; evalue=5.91e-74; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018360 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057803073.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057803073.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803073.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803073.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803073.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12934675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,D11 |
Chr3:12934694 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B17,B26,B9,C78 |
Chr3:12934694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,B26,B9,C78 |
Chr3:12934802 |
G |
GT |
1bp_insertion | frameshift_variant | 6 | B101,B40,C21,C4,C58,C8 |
Chr3:12934810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,D11 |
Chr3:12934845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr3:12934847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr3:12934851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C38 |
Chr3:12934888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:12934938 |
CAG |
C |
2bp_deletion | frameshift_variant | 7 | A14,B1,B138,C68,C73,D1,D3 |
Chr3:12934942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B60,C17,C25,C55 |
Chr3:12934944 |
A |
ATC |
2bp_insertion | frameshift_variant | 22 | A10,A16,A25,B111,B113,B121,B27,B32,B33,B42,B51,B56,B66,B73,B78,B83,C29,C41,C48,C52,C6,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803073.1PF00931
NB-ARC 281-446 aa
PF23559
WHD_DRP 529-599 aa
PF23598
LRR_14 653-871 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803073.1 |
Pfam | PF00931 |
NB-ARC | Domain | 281 | 446 | 1e-41 | 143.1 | NB-ARC domain |
XP_057803073.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 529 | 599 | 1.2e-21 | 77.2 | Disease resistance protein Winged helix domain |
XP_057803073.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 653 | 871 | 1.5e-14 | 54.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。