Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001132`

染色体: Chr03 坐标: 13066413-13071497 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001132`
名称	SmilChr03G001132
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13066413 - 13071497 / `+`

ID 对照

NCBI Gene ID	`LOC131017502`
GeneID	`131017502`
locus_tag	`-`
NCBI Name	`LOC131017502`
原始查询	`SmilChr03G001132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=30.7; qcov=1.06; evalue=3.01e-96; confidence=low
Rice	`Os01g0547000` - identity=27.7; qcov=1.05; evalue=3.71e-88; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017502

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802240.1`
2	Nucleus	细胞核	0.00000	`XP_057802240.1`
3	Chromosome	染色体	0.00000	`XP_057802240.1`
4	Centromere	着丝粒	0.00000	`XP_057802240.1`
5	Chromatin	染色质	0.00000	`XP_057802240.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13066524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B41,B59,C16
`Chr3:13066569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,A15,C36,C68
`Chr3:13066607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C12,C35,C73
`Chr3:13066639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr3:13066642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B72,C36
`Chr3:13066654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B34,B77,C60
`Chr3:13066659`	`ACG`	`A`	2bp_deletion	frameshift_variant	10	B21,B24,B34,B63,B83,B85,C32,C42,C60,C68
`Chr3:13066666`	`G`	`GTT`	2bp_insertion	frameshift_variant	10	B21,B24,B34,B63,B83,B85,C32,C42,C60,C68
`Chr3:13066682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B15,B16
`Chr3:13066689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr3:13066695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B7,B77,B80,C42,C60
`Chr3:13066723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B34,B44,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802240.1

886 aa

443

886

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-98 aa PF00931 NB-ARC 165-341 aa PF23559 WHD_DRP 428-497 aa PF23598 LRR_14 543-855 aa

XP_057802241.1

881 aa

440

881

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 6-98 aa PF00931 NB-ARC 165-336 aa PF23559 WHD_DRP 423-492 aa PF23598 LRR_14 538-850 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802240.1`	Pfam	`PF18052`	Rx_N	Domain	6	98	1.7e-18	67.2	Rx N-terminal domain
`XP_057802240.1`	Pfam	`PF00931`	NB-ARC	Domain	165	341	3.7e-24	86.0	NB-ARC domain
`XP_057802240.1`	Pfam	`PF23559`	WHD_DRP	Domain	428	497	2.7e-20	72.9	Disease resistance protein Winged helix domain
`XP_057802240.1`	Pfam	`PF23598`	LRR_14	Repeat	543	855	1e-36	127.2	Leucine-rich repeat region
`XP_057802241.1`	Pfam	`PF18052`	Rx_N	Domain	6	98	1.7e-18	67.2	Rx N-terminal domain
`XP_057802241.1`	Pfam	`PF00931`	NB-ARC	Domain	165	336	8.1e-27	94.6	NB-ARC domain
`XP_057802241.1`	Pfam	`PF23559`	WHD_DRP	Domain	423	492	2.6e-20	72.9	Disease resistance protein Winged helix domain
`XP_057802241.1`	Pfam	`PF23598`	LRR_14	Repeat	538	850	9.9e-37	127.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946258.1
AAAAAAGTCAATGAAAAATATATTATTAAGCCAACTTCAACCGACTAAACTTGATCTACCTAAAAGATCGAAGAGGCTGAAATCATTGACAGATCGAGATGGCGGCGGAGGCGGCAGTGTCCACGGCGGTGCTAAAGCTGGGCGATTTGCTGACGCGGAAGGTGGATCTTCTACGAGGCGGCGGCGTCATCGGAGAGGTCCAGCAGCTGAAAGATGAGCTCAAAGGGGTGCAGTGTTTCCTCAGAGACGCATCGGGAAAG...

XM_057946257.1
TGATCTACCTAAAAGATCGAAGAGGCTGAAATCATTGACAGATCGAGATGGCGGCGGAGGCGGCAGTGTCCACGGCGGTGCTAAAGCTGGGCGATTTGCTGACGCGGAAGGTGGATCTTCTACGAGGCGGCGGCGTCATCGGAGAGGTCCAGCAGCTGAAAGATGAGCTCAAAGGGGTGCAGTGTTTCCTCAGAGACGCATCGGGAAAGCAAGCCGACGACGTGGCAATACGCGATTGGATAGCCGAGACCGGAGAGGTG...

CDS

2 records

下载 CDS FASTA

LOC131017502
ATGGCGGCGGAGGCGGCAGTGTCCACGGCGGTGCTAAAGCTGGGCGATTTGCTGACGCGGAAGGTGGATCTTCTACGAGGCGGCGGCGTCATCGGAGAGGTCCAGCAGCTGAAAGATGAGCTCAAAGGGGTGCAGTGTTTCCTCAGAGACGCATCGGGAAAGCAAGCCGACGACGTGGCAATACGCGATTGGATAGCCGAGACCGGAGAGGTGGCTCACGACGCCGAAGACGCCGTCGAGGTATTCATTTTCAAGGTTGA...

Protein

2 records

下载 Protein FASTA

XP_057802240.1
MAAEAAVSTAVLKLGDLLTRKVDLLRGGGVIGEVQQLKDELKGVQCFLRDASGKQADDVAIRDWIAETGEVAHDAEDAVEVFIFKVERARIVLASFASSLKHKYLLKRFSRSINSIRKRLRGIEGRRSSLGIQDLGDRPSDGLERLPKLSQWQKDKHIVGMEKDIELVLEKAILNEGDDISISGIVGEGGTGKSTLARILYNHAAVADRFERRAWAVASKERRPRDIIKELYLQVKSGETMEWEMNFLERMELLELQQEL...

XP_057802241.1
MAAEAAVSTAVLKLGDLLTRKVDLLRGGGVIGEVQQLKDELKGVQCFLRDASGKQADDVAIRDWIAETGEVAHDAEDAVEVFIFKVERARIVLASFASSLKHKYLLKRFSRSINSIRKRLRGIEGRRSSLGIQDLGDRPSDGLERLPKLSQWQKDKHIVGMEKDIELVLEKAILNEGDDISISGIVGEGGTGKSTLARILYNHAAVADRFERRAWAVASKERRPRDIIKELYLQVKSGETMEWEMNFLERMELLELQQEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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