Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G001133`

Chromosome: Chr03 Coordinates: 13071779-13073682 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G001133`
Name	SmilChr03G001133
Description	germin-like protein subfamily 2 member 1
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	13071779 - 13073682 / `-`

ID Mapping

NCBI Gene ID	`LOC131017597`
GeneID	`131017597`
locus_tag	`-`
NCBI Name	`LOC131017597`
Original query	`SmilChr03G001133`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	germin-like protein subfamily 2 member 1
Product	germin-like protein subfamily 2 member 1
Arabidopsis	`AT1G09560` (GLP5) germin-like protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:837482] identity=77.2; qcov=0.904; evalue=1.62e-110; confidence=high
Rice	`Os05g0277500` (OsGLP5-2) - identity=74.6; qcov=0.904; evalue=4.61e-110; confidence=high
GO	GO:0005618 (cell wall); GO:0009506 (plasmodesma); GO:0010497 (plasmodesmata-mediated intercellular transport); GO:0030145 (manganese ion binding); GO:2000280 (regulation of root development)
KEGG	-
Pfam	PF00190 (Cupin_1); PF07883 (Cupin_2)
InterPro	-
eggNOG	-
NR	GeneID:131017597

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057802387.1`
2	Nucleus	细胞核	0.00000	`XP_057802387.1`
3	Chromosome	染色体	0.00000	`XP_057802387.1`
4	Centromere	着丝粒	0.00000	`XP_057802387.1`
5	Chromatin	染色质	0.00000	`XP_057802387.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:13072006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B63,B83,C32,C68,C79
`Chr3:13072015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:13072117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B63,B83,C32,C68,C79
`Chr3:13072144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:13072162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C30
`Chr3:13072237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B58,B60,B83,C8
`Chr3:13072300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr3:13072399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057802387.1

218 aa

109

218

Cupin_1

Cupin_2

PF00190 Cupin_1 61-208 aa PF07883 Cupin_2 97-169 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057802387.1`	Pfam	`PF00190`	Cupin_1	Domain	61	208	7.8e-52	175.6	Cupin
`XP_057802387.1`	Pfam	`PF07883`	Cupin_2	Domain	97	169	7.3e-12	45.5	Cupin domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057946404.1
CCTCATCCCTTTCTTTCTACGAAGGCATGTTTCGTGCTTTTGCAAACACCCCACCCCCACCCCCCACCCACCTTCTCACAGAAAATACCAAGTATAATAATTTTATATTTTGTCAAGTTTCTAGAGAAGTGAGAATTCCTGAAATTGCCGTATAAATATTGCACCCATACCCTTTACTTTTCTCTCAAACTTCTTACTCATTATTACATACTTTTCAAACACCCATACTATATATACACATTTGATCTCTTCTGCCAAAT...

CDS

1 records

Download CDS FASTA

LOC131017597
ATGTCTGATATGGCTGTTTGCAGCCTGCTTTTAATCATGGCTCTATTGACGCTCGGCAACACAGTTTCTGCTGATCCAGATATGCTTCAAGATCTTTGTGTTGCTGATCTCACATCTGGTGTGAAAGTGAACGGATACCCATGCAAGTCAAACGTGACGGCGGAGGATTTCTTCTTCGCCGGAATCGCGAAGCCCGGCGCCACCAACAACTCGATGGGGGCGCTGGTGACGGGCGCCAATGTGCAAAGGATCCCTGGGCT...

Protein

1 records

Download Protein FASTA

XP_057802387.1
MSDMAVCSLLLIMALLTLGNTVSADPDMLQDLCVADLTSGVKVNGYPCKSNVTAEDFFFAGIAKPGATNNSMGALVTGANVQRIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEVVFVLEGELDVGFITTANVLISKSIKQGDVFAFPKGLVHFQKNNGKVPAAVISAFNSQLPGTQSIAATLFAATPPVPDNVLTKAFMVGTKEVQKIKSRFAPKS

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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