Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001134`

染色体: Chr03 坐标: 13074680-13077615 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001134`
名称	SmilChr03G001134
描述	germin-like protein subfamily 2 member 1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13074680 - 13077615 / `+`

ID 对照

NCBI Gene ID	`LOC131017596`
GeneID	`131017596`
locus_tag	`-`
NCBI Name	`LOC131017596`
原始查询	`SmilChr03G001134`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	germin-like protein subfamily 2 member 1
产物	germin-like protein subfamily 2 member 1
Arabidopsis	`AT1G09560` (GLP5) germin-like protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:837482] identity=77.7; qcov=0.916; evalue=3.36e-111; confidence=high
Rice	`Os05g0277500` (OsGLP5-2) - identity=75.1; qcov=0.916; evalue=2.17e-110; confidence=high
GO	GO:0005618 (cell wall); GO:0009506 (plasmodesma); GO:0010497 (plasmodesmata-mediated intercellular transport); GO:0030145 (manganese ion binding); GO:2000280 (regulation of root development)
KEGG	-
Pfam	PF00190 (Cupin_1); PF07883 (Cupin_2)
InterPro	-
eggNOG	-
NR	GeneID:131017596

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057802386.1`
2	Nucleus	细胞核	0.00000	`XP_057802386.1`
3	Chromosome	染色体	0.00000	`XP_057802386.1`
4	Centromere	着丝粒	0.00000	`XP_057802386.1`
5	Chromatin	染色质	0.00000	`XP_057802386.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13074984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:13076955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:13076972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr3:13076979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:13077008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:13077018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:13077020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr3:13077042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:13077055`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C32
`Chr3:13077055`	`CT`	`C`	1bp_deletion	CDS_variant	1	C32
`Chr3:13077057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr3:13077069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802386.1

215 aa

108

215

Cupin_1

Cupin_2

PF00190 Cupin_1 58-204 aa PF07883 Cupin_2 94-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802386.1`	Pfam	`PF00190`	Cupin_1	Domain	58	204	2.8e-51	173.8	Cupin
`XP_057802386.1`	Pfam	`PF07883`	Cupin_2	Domain	94	166	2e-11	44.2	Cupin domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946403.1
TCTCTCTACGAAGGCGTGTTTCGTGCTTTTGCAAACACCCCACCCCCCACCCACCTCCTCACAGAAAATATTATAATAATTTATATTTTGTCAAGTTTCTAGAGAAGAGAGAATTCCTGACATTACTGTATAACTATTGCACCCATTTCCACCTAATCCCTTTACTTTTCTCTCAAACTCCTTACTCATTATTACATACTTTTCAAACACCCAACATACGCAGTTGAGCTCTTCTCCCAAATCAAAATTTCAAATCTCTG...

CDS

1 records

下载 CDS FASTA

LOC131017596
ATGGCTGTTTTCAGCCTGCTTCTAATCGTGGCTCTATTGGGGCTCAGCAACACAGTTTCTGCTGATCCAGATATGCTTCAAGATCTTTGTGTAGCTGATCTCACATCTGGTGTGAAAGTGAACGGATACCCTTGCAAGGCAAACGTGACGGCGGAGGATTTCTTCTTCGCCGGAATCGCGAAACCCGGCGCCACCAACAACTCGATGGGGGCGCTGGTGACCGGCGCCAACGTGCAAAGGATCCCTGGGCTTAACACGCT...

Protein

1 records

下载 Protein FASTA

XP_057802386.1
MAVFSLLLIVALLGLSNTVSADPDMLQDLCVADLTSGVKVNGYPCKANVTAEDFFFAGIAKPGATNNSMGALVTGANVQRIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEVVFVLEGELDVGFITTANVLISKSIKQGDVFAFPKGLVHFQKNNGKIPAAVISAFNSQLPGTQSIAATLFAATPPVPDNVLTKAFMVGTKEVEKIKSKFAPKS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器