Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001139`

染色体: Chr03 坐标: 13116341-13118359 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001139`
名称	SmilChr03G001139
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13116341 - 13118359 / `-`

ID 对照

NCBI Gene ID	`LOC131018364`
GeneID	`131018364`
locus_tag	`-`
NCBI Name	`LOC131018364`
原始查询	`SmilChr03G001139`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.6; qcov=1.01; evalue=2.06e-32; confidence=low
Rice	`Os10g0358200` - identity=36.1; qcov=0.363; evalue=6.25e-35; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131018364

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057803077.1`
2	Cell membrane	细胞膜	0.40000	`XP_057803077.1`
3	Nucleus	细胞核	0.20000	`XP_057803077.1`
4	Cytoplasm	细胞质	0.20000	`XP_057803077.1`
5	Chromosome	染色体	0.00000	`XP_057803077.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13116409`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A24,B31,B35,B52,B80
`Chr3:13116409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B31,B35,B52,B80
`Chr3:13116461`	`A`	`AC`	1bp_insertion	frameshift_variant	6	A24,B80,C12,C48,C74,D2
`Chr3:13116465`	`AG`	`A`	1bp_deletion	frameshift_variant	7	B109,B137,B14,B17,B85,C65,C77
`Chr3:13116511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:13116530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B82,C31,C34,C63,C67
`Chr3:13116549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr3:13116557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:13116607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B106,B15,B4,B97
`Chr3:13116628`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B41
`Chr3:13116628`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B41
`Chr3:13116630`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B34,C45,C51,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803077.1

672 aa

336

672

WHD_DRP

LRR_14

PF23559 WHD_DRP 125-198 aa PF23598 LRR_14 335-600 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803077.1`	Pfam	`PF23559`	WHD_DRP	Domain	125	198	3.1e-16	59.9	Disease resistance protein Winged helix domain
`XP_057803077.1`	Pfam	`PF23598`	LRR_14	Repeat	335	600	1.3e-16	61.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947094.1
ATGGTGACAACTAGATTGTCAGATTTGGGAGCCCGATTGGATAACAATAATGTTGTTGATATGAGATTTTTGGATGAGGAAAGTAGCTGGAGGCTGTTTTGCAAAGCTGTGTTTGGAGGGGGAAGTTGCCCAGTAGAATTGGAGAAAATTGGGAGGAATATTGTAGAGAGTTGTAGAGGACTTCCATTATCGATTGTTGTGATGGGACGTCTTCTGGAAAGACTTGAACGAACTAAAGAATGTTGGAAATCTATCAAGAG...

CDS

1 records

下载 CDS FASTA

LOC131018364
ATGGTGACAACTAGATTGTCAGATTTGGGAGCCCGATTGGATAACAATAATGTTGTTGATATGAGATTTTTGGATGAGGAAAGTAGCTGGAGGCTGTTTTGCAAAGCTGTGTTTGGAGGGGGAAGTTGCCCAGTAGAATTGGAGAAAATTGGGAGGAATATTGTAGAGAGTTGTAGAGGACTTCCATTATCGATTGTTGTGATGGGACGTCTTCTGGAAAGACTTGAACGAACTAAAGAATGTTGGAAATCTATCAAGAG...

Protein

1 records

下载 Protein FASTA

XP_057803077.1
MVTTRLSDLGARLDNNNVVDMRFLDEESSWRLFCKAVFGGGSCPVELEKIGRNIVESCRGLPLSIVVMGRLLERLERTKECWKSIKRSLKSGVRLENYDHCLKILKLSYNHMPIHLKPCFLYMGVFEEDNVIRVSTVVKLWVSEGFLNPISGKSLETVAREYLKELVDRNLIILVHELGYSTGSMKYCKIHDSLRDLCLREAENERFYHVVGRDSPRGIHSQRRIVIPRGTSKKIIRNAMKSSPDARSYISDHERVRLLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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