Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001140`

染色体: Chr03 坐标: 13130690-13135602 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001140`
名称	SmilChr03G001140
描述	late blight resistance protein R1-A-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13130690 - 13135602 / `-`

ID 对照

NCBI Gene ID	`LOC131017511`
GeneID	`131017511`
locus_tag	`-`
NCBI Name	`LOC131017511`
原始查询	`SmilChr03G001140`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	late blight resistance protein R1-A-like
产物	late blight resistance protein R1-A-like
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=27.7; qcov=0.986; evalue=1.13e-64; confidence=low
Rice	`Os07g0186500` - identity=30.9; qcov=0.754; evalue=1.86e-64; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017511

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802250.1`
2	Nucleus	细胞核	0.00000	`XP_057802250.1`
3	Chromosome	染色体	0.00000	`XP_057802250.1`
4	Centromere	着丝粒	0.00000	`XP_057802250.1`
5	Chromatin	染色质	0.00000	`XP_057802250.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13130895`	`C`	`CA`	1bp_insertion	frameshift_variant	17	A11,B1,B11,B117,B128,B131,B14,B15,B85,B95,C1,C2,C54,C79,C85,C87,C9
`Chr3:13130896`	`C`	`CAA`	2bp_insertion	frameshift_variant	17	A11,B1,B11,B117,B128,B131,B14,B15,B85,B95,C1,C2,C54,C79,C85,C87,C9
`Chr3:13133135`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	A19
`Chr3:13133135`	`T`	`TTG`	2bp_insertion	CDS_variant	1	A19
`Chr3:13133193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr3:13133198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,B47,D11
`Chr3:13133207`	`G`	`GT`	1bp_insertion	frameshift_variant	49	A1,A15,A20,A4,A6,A8,B111,B113,B114,B115,B129,B131,B133,B17,B40,B41,B51,B55,B65,B69,B70,B73,B74,B80,B9,B97,C13,C16,C17,C27,C40,C46,C48,C5,C50,C51,C52,C6,C62,C64,C76,C78,C81,C82,C85,D11,D3,D6,D8
`Chr3:13133250`	`C`	`CTG`	2bp_insertion	frameshift_variant	3	B122,B30,D11
`Chr3:13133250`	`C`	`CTG`	2bp_insertion	CDS_variant	3	B122,B30,D11
`Chr3:13133262`	`A`	`AC`	1bp_insertion	frameshift_variant	3	B122,B30,D11
`Chr3:13133262`	`A`	`AC`	1bp_insertion	CDS_variant	3	B122,B30,D11
`Chr3:13133263`	`T`	`TC`	1bp_insertion	frameshift_variant	10	A5,B109,B37,B54,B62,B63,B83,C32,C34,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802250.1

870 aa

435

870

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 217-390 aa PF23559 WHD_DRP 476-547 aa PF23598 LRR_14 605-869 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802250.1`	Pfam	`PF00931`	NB-ARC	Domain	217	390	9.7e-40	136.7	NB-ARC domain
`XP_057802250.1`	Pfam	`PF23559`	WHD_DRP	Domain	476	547	2.2e-16	60.3	Disease resistance protein Winged helix domain
`XP_057802250.1`	Pfam	`PF23598`	LRR_14	Repeat	605	869	1.9e-14	54.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946267.1
CAAATAAATGCTCGAATCAAACCCCCCTTCAATTTCCAGCCACTCATCCTTCCAATCCTATCTGCATTTCCATTCTCTCTCTGCAACCAAAATAAAAAAACTTCTGCAACTAAAAAAAAAAAAATATCAGTCGGAGATGGCGGCTTATGCAGCTGTGGTTTCTCTTATGCAAACCATCCATCTGATTGAGCATCATCCATTCCCTCCAATTTCTATGGACAAACAACAAGTTGAATCTCTTGCTGAAATTGTTATGTTCT...

CDS

1 records

下载 CDS FASTA

LOC131017511
ATGCTCGAATCAAACCCCCCTTCAATTTCCAGCCACTCATCCTTCCAATCCTATCTGCATTTCCATTCTCTCTCTGCAACCAAAATAAAAAAACTTCTGCAACTAAAAAAAAAAAAATATCAGTCGGAGATGGCGGCTTATGCAGCTGTGGTTTCTCTTATGCAAACCATCCATCTGATTGAGCATCATCCATTCCCTCCAATTTCTATGGACAAACAACAAGTTGAATCTCTTGCTGAAATTGTTATGTTCTTGCAGAA...

Protein

1 records

下载 Protein FASTA

XP_057802250.1
MLESNPPSISSHSSFQSYLHFHSLSATKIKKLLQLKKKKYQSEMAAYAAVVSLMQTIHLIEHHPFPPISMDKQQVESLAEIVMFLQKFLEGYKSPVADGDEADQLETRIADAAHAAEDAIESHISDQILPAVSKNERNRIRLINFFRGLKKPQIDGPKIISADLYESLQKVIEDMDLIKKEVTEVADKAAVHSQLQRQISTSTSSLSRTNSTMMGFDDLMHQLMDKLTNGEPHRRVIPIVGMGGIGKTTLARNVYARFTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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