当前解析结果
SmilChr03G001147| 统一新 Gene ID | SmilChr03G001147 |
|---|---|
| 名称 | SmilChr03G001147 |
| 描述 | late blight resistance protein R1-A-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13222908 - 13224566 / - |
| NCBI Gene ID | LOC131018371 |
|---|---|
| GeneID | 131018371 |
| locus_tag | - |
| NCBI Name | LOC131018371 |
| 原始查询 | SmilChr03G001147 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | late blight resistance protein R1-A-like |
| 产物 | late blight resistance protein R1-A-like |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.7; qcov=1; evalue=6.07e-28; confidence=low |
| Rice | Os10g0358200- identity=26.6; qcov=1.03; evalue=1.08e-23; confidence=low |
| GO | GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018371 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803084.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057803084.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803084.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803084.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13222918 |
G |
GA |
1bp_insertion | frameshift_variant | 8 | B118,B127,B22,B23,B54,B71,B98,C39 |
Chr3:13222945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:13223046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B63,B83,C32,C68 |
Chr3:13223137 |
C |
T |
EMS_canonical_SNV | stop_gained | 44 | A10,A13,B105,B11,B117,B118,B12,B124,B127,B131,B14,B15,B16,B20,B22,B23,B30,B34,B5,B53,B54,B55,B64,B71,B74,B86,B98,B99,C13,C14,C15,C18,C2,C22,C24,C29,C36,C39,C55,C63,C80,C87,D10,D5 |
Chr3:13223161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr3:13223189 |
AAT |
A |
2bp_deletion | frameshift_variant | 54 | A13,A21,A25,A5,A7,B105,B120,B121,B129,B134,B137,B20,B24,B28,B29,B32,B34,B45,B47,B48,B49,B53,B59,B70,B76,B78,B79,B86,B87,B90,B92,B93,B94,B98,C15,C18,C24,C30,C32,C33,C36,C39,C45,C49,C53,C60,C64,C65,C68,C7,C70,C72,D1,D9 |
Chr3:13223202 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 26 | A10,A13,A7,B105,B106,B121,B20,B29,B32,B34,B47,B48,B53,B78,B86,B87,B98,C33,C36,C39,C45,C49,C65,C68,C70,D1 |
Chr3:13223205 |
AC |
A |
1bp_deletion | frameshift_variant | 11 | A13,B105,B106,B134,B20,B29,B34,B86,C45,C60,D1 |
Chr3:13223212 |
A |
ATG |
2bp_insertion | frameshift_variant | 31 | A13,A21,A25,A9,B105,B106,B120,B129,B134,B137,B20,B24,B29,B45,B49,B59,B76,B79,B86,B93,B94,B96,C32,C45,C51,C53,C60,C7,C72,C75,D9 |
Chr3:13223213 |
A |
AT |
1bp_insertion | frameshift_variant | 24 | A10,A13,A5,A7,B105,B113,B121,B20,B29,B32,B47,B48,B53,B78,B86,B98,C33,C36,C39,C45,C49,C65,C68,C70 |
Chr3:13223220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C60 |
Chr3:13223252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B115,B39,B81,C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803084.1PF23559
WHD_DRP 58-144 aa
PF23598
LRR_14 203-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803084.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 58 | 144 | 3.9e-13 | 49.9 | Disease resistance protein Winged helix domain |
XP_057803084.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 203 | 501 | 1.7e-14 | 54.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。