Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001148`

染色体: Chr03 坐标: 13245752-13246847 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001148`
名称	SmilChr03G001148
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13245752 - 13246847 / `-`

ID 对照

NCBI Gene ID	`LOC131018372`
GeneID	`131018372`
locus_tag	`-`
NCBI Name	`LOC131018372`
原始查询	`SmilChr03G001148`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=27.4; qcov=1.22; evalue=9.02e-26; confidence=low
Rice	`Os07g0269800` (OsFbox361) - identity=26.4; qcov=0.952; evalue=4.03e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018372

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057803085.1`
2	Cytoplasm	细胞质	0.80000	`XP_057803085.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803085.1`
4	Chromosome	染色体	0.00000	`XP_057803085.1`
5	Centromere	着丝粒	0.00000	`XP_057803085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13245997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:13245999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr3:13246025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr3:13246071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B45,C14
`Chr3:13246092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr3:13246254`	`CA`	`C`	1bp_deletion	frameshift_variant	33	A10,A18,A20,A23,B111,B3,B42,B43,B45,B51,B55,B57,B62,B65,B81,B84,B88,B91,C10,C25,C34,C35,C38,C44,C52,C59,C60,C62,C74,C77,C84,D3,D4
`Chr3:13246257`	`TAA`	`T`	2bp_deletion	frameshift_variant	33	A10,A18,A20,A23,B111,B3,B42,B43,B45,B51,B55,B57,B62,B65,B81,B84,B88,B91,C10,C25,C34,C35,C38,C44,C52,C59,C60,C62,C74,C77,C84,D3,D4
`Chr3:13246279`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr3:13246443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:13246648`	`CG`	`C`	1bp_deletion	frameshift_variant	128	A10,A11,A14,A19,A2,A20,A23,A5,A6,A7,A9,B101,B103,B108,B109,B11,B111,B112,B114,B115,B123,B124,B126,B128,B131,B137,B138,B15,B17,B18,B19,B2,B20,B22,B25,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B5,B51,B54,B55,B56,B59,B6,B62,B65,B7,B70,B71,B74,B75,B76,B77,B78,B79,B80,B84,B89,B9,B90,B91,B92,B94,B96,B98,B99,C1,C10,C11,C14,C15,C16,C17,C19,C20,C22,C25,C26,C27,C28,C3,C30,C32,C33,C34,C35,C38,C40,C44,C46,C48,C49,C5,C51,C52,C53,C55,C57,C59,C60,C62,C68,C69,C71,C73,C74,C75,C78,C81,C85,C86,C9,D1,D10,D2,D3,D4,D5,D6,D8
`Chr3:13246667`	`T`	`TA`	1bp_insertion	frameshift_variant	116	A10,A11,A14,A19,A2,A20,A23,A5,A6,A7,A9,B101,B103,B108,B109,B111,B112,B115,B123,B124,B126,B128,B131,B137,B138,B15,B17,B18,B19,B2,B20,B22,B25,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B5,B51,B56,B59,B6,B62,B65,B7,B71,B74,B75,B76,B78,B79,B80,B84,B89,B90,B91,B94,B96,B98,B99,C1,C10,C11,C14,C15,C16,C17,C19,C20,C22,C26,C27,C28,C3,C30,C33,C34,C35,C38,C40,C44,C46,C48,C49,C5,C51,C52,C53,C55,C57,C60,C62,C69,C71,C73,C74,C75,C78,C81,C85,C86,C9,D1,D10,D2,D3,D4,D5,D6,D8
`Chr3:13246692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803085.1

330 aa

165

330

F-box-like

F-box

FBA_3

FBA_1

PF12937 F-box-like 12-48 aa PF00646 F-box 13-50 aa PF08268 FBA_3 57-268 aa PF07734 FBA_1 65-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803085.1`	Pfam	`PF12937`	F-box-like	Domain	12	48	6.4e-08	33.0	F-box-like
`XP_057803085.1`	Pfam	`PF00646`	F-box	Domain	13	50	3.6e-09	36.9	F-box domain
`XP_057803085.1`	Pfam	`PF08268`	FBA_3	Repeat	57	268	6.6e-19	68.8	F-box associated beta propeller domain
`XP_057803085.1`	Pfam	`PF07734`	FBA_1	Repeat	65	263	9.8e-21	74.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947102.1
ATGGATAGCAAAAGCCGCAAACTATCTCTCCCTTTTCTTCCTGAAGAAATCATTGAAGAGATACTGCCAAGACTTGCGGTGAAATCACTCCTGCGATTCAGGTGCGTTTCGAAGTCATGGCACTCTTTGATTGGCAGCGAGCAATTCATCAAAACCCATCTCCAAAATTCATCAAAAAACACAGCTCTTGCCCATCACCGGCTAATTACCTCTCGCTATTCAAAACAGCGTCAGCACCGTATGGGTCAAATCGTCGGCTG...

CDS

1 records

下载 CDS FASTA

LOC131018372
ATGGATAGCAAAAGCCGCAAACTATCTCTCCCTTTTCTTCCTGAAGAAATCATTGAAGAGATACTGCCAAGACTTGCGGTGAAATCACTCCTGCGATTCAGGTGCGTTTCGAAGTCATGGCACTCTTTGATTGGCAGCGAGCAATTCATCAAAACCCATCTCCAAAATTCATCAAAAAACACAGCTCTTGCCCATCACCGGCTAATTACCTCTCGCTATTCAAAACAGCGTCAGCACCGTATGGGTCAAATCGTCGGCTG...

Protein

1 records

下载 Protein FASTA

XP_057803085.1
MDSKSRKLSLPFLPEEIIEEILPRLAVKSLLRFRCVSKSWHSLIGSEQFIKTHLQNSSKNTALAHHRLITSRYSKQRQHRMGQIVGCCNGLVCVIWKNCFVLWNPAIRIFKESPPSYRVGLVNCGFGWDESSGEYKLLVVSFNDSLNTQDDYMCEVYGSKSNSWKPVESGNFDSVHGKAHFASGKLHWLRMKANGGLMNIVADIVTFDLKSEAFGKMEFPRPCDSSVRLGALEGRLCVVSNYKRTHFDVWFMKDDSWVKM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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