Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001149`

染色体: Chr03 坐标: 13248769-13249803 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001149`
名称	SmilChr03G001149
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13248769 - 13249803 / `+`

ID 对照

NCBI Gene ID	`LOC131018373`
GeneID	`131018373`
locus_tag	`-`
NCBI Name	`LOC131018373`
原始查询	`SmilChr03G001149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=30.6; qcov=0.817; evalue=4.62e-26; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=27.5; qcov=0.698; evalue=3.14e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018373

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057803086.1`
2	Cytoplasm	细胞质	0.80000	`XP_057803086.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803086.1`
4	Chromosome	染色体	0.00000	`XP_057803086.1`
5	Centromere	着丝粒	0.00000	`XP_057803086.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13248785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B59,B94,C12,C37
`Chr3:13248836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:13248848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,D1
`Chr3:13248939`	`CA`	`C`	1bp_deletion	frameshift_variant	73	A10,A13,A16,A19,A4,A5,A7,B10,B109,B11,B112,B120,B127,B131,B134,B137,B15,B18,B19,B25,B29,B37,B39,B41,B48,B5,B53,B55,B58,B59,B63,B64,B66,B70,B74,B76,B77,B80,B81,B82,B84,B91,B95,B97,C1,C15,C16,C21,C24,C25,C3,C32,C35,C40,C42,C43,C47,C49,C51,C52,C54,C55,C57,C68,C72,C77,C80,C83,C9,D1,D6,D8,D9
`Chr3:13248945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B79,C39
`Chr3:13248958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B79,C39
`Chr3:13249029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:13249071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:13249088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B76,C1,C43,C49
`Chr3:13249090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:13249098`	`A`	`AC`	1bp_insertion	frameshift_variant	58	A10,A11,A2,A23,A3,A7,B114,B115,B117,B124,B126,B135,B20,B24,B33,B38,B39,B40,B46,B48,B49,B5,B53,B54,B57,B6,B68,B7,B71,B79,B85,B86,B9,B94,C1,C10,C11,C14,C18,C19,C2,C21,C22,C26,C31,C33,C34,C44,C45,C48,C58,C61,C63,C64,C66,C67,C69,C83
`Chr3:13249115`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B131,B89,C32,C55,C68,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803086.1

344 aa

172

344

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 11-49 aa PF12937 F-box-like 13-48 aa PF08268 FBA_3 88-268 aa PF07734 FBA_1 90-261 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803086.1`	Pfam	`PF00646`	F-box	Domain	11	49	9.2e-11	41.9	F-box domain
`XP_057803086.1`	Pfam	`PF12937`	F-box-like	Domain	13	48	3.4e-06	27.4	F-box-like
`XP_057803086.1`	Pfam	`PF08268`	FBA_3	Repeat	88	268	7.7e-16	58.7	F-box associated beta propeller domain
`XP_057803086.1`	Pfam	`PF07734`	FBA_1	Repeat	90	261	1.5e-16	61.0	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947103.1
ATGGATACCGACGGCGGCGAGCTATCTCTCCTTTTTCCTATAGAAATCGTCGAAGAAATACTGTCAAGACTTCCGGTGGCATCGCTCTTGAAATTCCGATGCGTTTCGAAATCATGGCGTTGTTTGATTGGAAGCGACCGATTCATCAAAACCCACCTGCAAACTTCGTCCAAAAACGCATCTTTTTCCCATCACAGGCTCGTTCTTAACAAATCTCTGAACTTGTTCGATGATGGGGTGAATACACTGTGGAGGTCCCC...

CDS

1 records

下载 CDS FASTA

LOC131018373
ATGGATACCGACGGCGGCGAGCTATCTCTCCTTTTTCCTATAGAAATCGTCGAAGAAATACTGTCAAGACTTCCGGTGGCATCGCTCTTGAAATTCCGATGCGTTTCGAAATCATGGCGTTGTTTGATTGGAAGCGACCGATTCATCAAAACCCACCTGCAAACTTCGTCCAAAAACGCATCTTTTTCCCATCACAGGCTCGTTCTTAACAAATCTCTGAACTTGTTCGATGATGGGGTGAATACACTGTGGAGGTCCCC...

Protein

1 records

下载 Protein FASTA

XP_057803086.1
MDTDGGELSLLFPIEIVEEILSRLPVASLLKFRCVSKSWRCLIGSDRFIKTHLQTSSKNASFSHHRLVLNKSLNLFDDGVNTLWRSPVLIVGCCNGLVCCCINLEKGRFILWNPATRISKELPQLVIDNMRWSIVTYGFGWDESSDAHKVFVVLFSRKRWVGKLYSSNTNSWKTVTEYGDFELIYGDAEFASGKLHWLRKRRGGSGGWYAADIATFDLKSEEFGVMELPCESTLSLSLNEGCLSVVCYNVRTLFDVWVMK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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