当前解析结果
SmilChr03G001161| 统一新 Gene ID | SmilChr03G001161 |
|---|---|
| 名称 | SmilChr03G001161 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13387266 - 13388270 / + |
| NCBI Gene ID | LOC131018383 |
|---|---|
| GeneID | 131018383 |
| locus_tag | - |
| NCBI Name | LOC131018383 |
| 原始查询 | SmilChr03G001161 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=30.1; qcov=0.925; evalue=2.12e-28; confidence=low |
| Rice | Os12g0164300 (OsFbox646)- identity=24.5; qcov=0.94; evalue=3.31e-16; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018383 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057803093.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803093.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057803093.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803093.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803093.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13387287 |
CTA |
C |
2bp_deletion | frameshift_variant | 1 | B122 |
Chr3:13387287 |
CTA |
C |
2bp_deletion | CDS_variant | 1 | B122 |
Chr3:13387320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr3:13387351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:13387425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,D5 |
Chr3:13387698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B136,B26 |
Chr3:13387727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,D5 |
Chr3:13387757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C69 |
Chr3:13387790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:13387791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B60,B7,B77,C22,C69 |
Chr3:13387811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B7,B77,C22,C69 |
Chr3:13387940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C79,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803093.1PF00646
F-box 11-50 aa
PF12937
F-box-like 12-47 aa
PF08268
FBA_3 83-267 aa
PF07734
FBA_1 87-269 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803093.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 50 | 1.3e-12 | 47.8 | F-box domain |
XP_057803093.1 |
Pfam | PF12937 |
F-box-like | Domain | 12 | 47 | 7.2e-09 | 36.0 | F-box-like |
XP_057803093.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 83 | 267 | 1.1e-18 | 68.1 | F-box associated beta propeller domain |
XP_057803093.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 87 | 269 | 2.4e-19 | 70.2 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。